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2015 ; 5
(ä): 14577
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Determining Associations between Human Diseases and non-coding RNAs with Critical
Roles in Network Control
#MMPMID26459019
Kagami H
; Akutsu T
; Maegawa S
; Hosokawa H
; Nacher JC
Sci Rep
2015[Oct]; 5
(ä): 14577
PMID26459019
show ga
Deciphering the association between life molecules and human diseases is
currently an important task in systems biology. Research over the past decade has
unveiled that the human genome is almost entirely transcribed, producing a vast
number of non-protein-coding RNAs (ncRNAs) with potential regulatory functions.
More recent findings suggest that many diseases may not be exclusively linked to
mutations in protein-coding genes. The combination of these arguments poses the
question of whether ncRNAs that play a critical role in network control are also
enriched with disease-associated ncRNAs. To address this question, we mapped the
available annotated information of more than 350 human disorders to the largest
collection of human ncRNA-protein interactions, which define a bipartite network
of almost 93,000 interactions. Using a novel algorithmic-based controllability
framework applied to the constructed bipartite network, we found that ncRNAs
engaged in critical network control are also statistically linked to human
disorders (P-value of P = 9.8 × 10(-109)). Taken together, these findings suggest
that the addition of those genes that encode optimized subsets of ncRNAs engaged
in critical control within the pool of candidate genes could aid disease gene
prioritization studies.