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10.1002/cmdc.201500260

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suck abstract from ncbi


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pmid26174033
      ChemMedChem 2015 ; 10 (9 ): 1489-97
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  • Development of Small-Molecule Cryptochrome Stabilizer Derivatives as Modulators of the Circadian Clock #MMPMID26174033
  • Lee JW ; Hirota T ; Kumar A ; Kim NJ ; Irle S ; Kay SA
  • ChemMedChem 2015[Sep]; 10 (9 ): 1489-97 PMID26174033 show ga
  • Small-molecule probes have been playing prominent roles in furthering our understanding of the molecular underpinnings of the circadian clock. We previously discovered a carbazole derivative, KL001 (N-(3-(9H-carbazol-9-yl)-2-hydroxypropyl)-N-(furan-2-ylmethyl)methanesulfonamide), as a stabilizer of the clock protein cryptochrome (CRY). Herein we describe an extensive structure-activity relationship analysis of KL001 derivatives leading to the development of a highly active derivative: 2-(9H-carbazol-9-yl)-N-(2-chloro-6-cyanophenyl)acetamide (KL044). Subsequent 3D-QSAR analysis identified critical features of KL001 derivatives and provided a molecular-level understanding of their interaction with CRY. The electron-rich carbazole, amide/hydroxy linker, sulfonyl group, and electron-withdrawing nitrile moieties contribute to greater biological activity. The hydrogen bonding interactions with Ser394 and His357 as well as stronger CH-? interactions with Trp290 make KL044 a better binder than KL001. KL044 lengthened the circadian period, repressed Per2 activity, and stabilized CRY in reporter assays with roughly tenfold higher potency than KL001. Altogether, KL044 is a powerful chemical tool to control the function of the circadian clock through its action on CRY.
  • |*Quantitative Structure-Activity Relationship [MESH]
  • |Acetanilides/chemistry/pharmacology [MESH]
  • |Carbazoles/*chemistry/*pharmacology [MESH]
  • |Circadian Clocks/*drug effects [MESH]
  • |Cryptochromes/genetics/*metabolism [MESH]
  • |HEK293 Cells [MESH]
  • |Histidine/chemistry [MESH]
  • |Humans [MESH]
  • |Hydrogen Bonding [MESH]
  • |Period Circadian Proteins/genetics/metabolism [MESH]
  • |Protein Stability [MESH]
  • |Serine/chemistry [MESH]


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