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2015 ; 7
(1
): 77
Nephropedia Template TP
gab.com Text
Twit Text FOAVip
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English Wikipedia
ClinLabGeneticist: a tool for clinical management of genetic variants from whole
exome sequencing in clinical genetic laboratories
#MMPMID26338694
Wang J
; Liao J
; Zhang J
; Cheng WY
; Hakenberg J
; Ma M
; Webb BD
; Ramasamudram-Chakravarthi R
; Karger L
; Mehta L
; Kornreich R
; Diaz GA
; Li S
; Edelmann L
; Chen R
Genome Med
2015[Jul]; 7
(1
): 77
PMID26338694
show ga
Routine clinical application of whole exome sequencing remains challenging due to
difficulties in variant interpretation, large dataset management, and workflow
integration. We describe a tool named ClinLabGeneticist to implement a workflow
in clinical laboratories for management of variant assessment in genetic testing
and disease diagnosis. We established an extensive variant annotation data source
for the identification of pathogenic variants. A dashboard was deployed to aid a
multi-step, hierarchical review process leading to final clinical decisions on
genetic variant assessment. In addition, a central database was built to archive
all of the genetic testing data, notes, and comments throughout the review
process, variant validation data by Sanger sequencing as well as the final
clinical reports for future reference. The entire workflow including data entry,
distribution of work assignments, variant evaluation and review, selection of
variants for validation, report generation, and communications between various
personnel is integrated into a single data management platform. Three case
studies are presented to illustrate the utility of ClinLabGeneticist.
ClinLabGeneticist is freely available to academia at
http://rongchenlab.org/software/clinlabgeneticist .