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10.1016/j.bpc.2015.06.011

http://scihub22266oqcxt.onion/10.1016/j.bpc.2015.06.011
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C4554884!4554884!26164502
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suck abstract from ncbi


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pmid26164502      Biophys+Chem 2015 ; 206 (ä): 22-39
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  • Lipid Insertion Domain Unfolding Regulates Protein Orientational Transition Behavior in a Lipid Bilayer #MMPMID26164502
  • Cheng KH; Qiu L; Cheng SY; Vaughn MW
  • Biophys Chem 2015[Nov]; 206 (ä): 22-39 PMID26164502show ga
  • We have used coarse-grained (CG) and united atom (UA) molecular dynamics simulations to explore the mechanisms of protein orientational transition of a model peptide (A?42) in a phosphatidylcholine/cholesterol (PC/CHO) lipid bilayer. We started with an inserted state of A?42 containing a folded (I) or unfolded (II) K28-A42 lipid insertion domain (LID), which was stabilized by the K28-snorkeling and A42-anchoring to the PC polar groups in the lipid bilayer. After a UA-to-CG transformation and a 1000 ns-CG simulation for enhancing the sampling of protein orientations, we discovered two transitions: I-to-?deep inserted? state with disrupted K28-snorkeling and II-to-?deep surface? state with disrupted A42-anchoring. The new states remained stable after a CG-to-UA transformation and a 200 ns-UA simulation relaxation. Significant changes in the cholesterol-binding domain of A?42 and protein-induced membrane disruptions were evident after the transitions. We propose that the conformation of the LID regulates protein orientational transitions in the lipid membrane.
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