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10.1016/j.bpc.2015.06.011

http://scihub22266oqcxt.onion/10.1016/j.bpc.2015.06.011
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suck abstract from ncbi


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pmid26164502
      Biophys+Chem 2015 ; 206 (ä): 22-39
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  • Lipid insertion domain unfolding regulates protein orientational transition behavior in a lipid bilayer #MMPMID26164502
  • Cheng KH ; Qiu L ; Cheng SY ; Vaughn MW
  • Biophys Chem 2015[Nov]; 206 (ä): 22-39 PMID26164502 show ga
  • We have used coarse-grained (CG) and united atom (UA) molecular dynamics simulations to explore the mechanisms of protein orientational transition of a model peptide (A?42) in a phosphatidylcholine/cholesterol (PC/CHO) lipid bilayer. We started with an inserted state of A?42 containing a folded (I) or unfolded (II) K28-A42 lipid insertion domain (LID), which was stabilized by the K28-snorkeling and A42-anchoring to the PC polar groups in the lipid bilayer. After a UA-to-CG transformation and a 1000ns-CG simulation for enhancing the sampling of protein orientations, we discovered two transitions: I-to-"deep inserted" state with disrupted K28-snorkeling and II-to-"deep surface" state with disrupted A42-anchoring. The new states remained stable after a CG-to-UA transformation and a 200ns-UA simulation relaxation. Significant changes in the cholesterol-binding domain of A?42 and protein-induced membrane disruptions were evident after the transitions. We propose that the conformation of the LID regulates protein orientational transitions in the lipid membrane.
  • |*Protein Unfolding [MESH]
  • |Amino Acid Sequence [MESH]
  • |Amyloid beta-Peptides/*chemistry [MESH]
  • |Cholesterol/*chemistry [MESH]
  • |Humans [MESH]
  • |Lipid Bilayers/*chemistry [MESH]
  • |Molecular Dynamics Simulation [MESH]
  • |Molecular Sequence Data [MESH]
  • |Peptide Fragments/*chemistry [MESH]
  • |Phosphatidylcholines/*chemistry [MESH]


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