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10.1371/journal.pone.0133280

http://scihub22266oqcxt.onion/10.1371/journal.pone.0133280
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suck abstract from ncbi


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pmid26208222      PLoS+One 2015 ; 10 (7): ä
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  • c-Myb Binding Sites in Haematopoietic Chromatin Landscapes #MMPMID26208222
  • Bengtsen M; Klepper K; Gundersen S; Cuervo I; Drabløs F; Hovig E; Sandve GK; Gabrielsen OS; Eskeland R
  • PLoS One 2015[]; 10 (7): ä PMID26208222show ga
  • Strict control of tissue-specific gene expression plays a pivotal role during lineage commitment. The transcription factor c-Myb has an essential role in adult haematopoiesis and functions as an oncogene when rearranged in human cancers. Here we have exploited digital genomic footprinting analysis to obtain a global picture of c-Myb occupancy in the genome of six different haematopoietic cell-types. We have biologically validated several c-Myb footprints using c-Myb knockdown data, reporter assays and DamID analysis. We show that our predicted conserved c-Myb footprints are highly dependent on the haematopoietic cell type, but that there is a group of gene targets common to all cell-types analysed. Furthermore, we find that c-Myb footprints co-localise with active histone mark H3K4me3 and are significantly enriched at exons. We analysed co-localisation of c-Myb footprints with 104 chromatin regulatory factors in K562 cells, and identified nine proteins that are enriched together with c-Myb footprints on genes positively regulated by c-Myb and one protein enriched on negatively regulated genes. Our data suggest that c-Myb is a transcription factor with multifaceted target regulation depending on cell type.
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