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Scalable microfluidics for single-cell RNA printing and sequencing #MMPMID26047807
Bose S; Wan Z; Carr A; Rizvi AH; Vieira G; Pe?er D; Sims PA
Genome Biol 2015[]; 16 (1): ä PMID26047807show ga
Many important biological questions demand single-cell transcriptomics on a large scale. Hence, new tools are urgently needed for efficient, inexpensive manipulation of RNA from individual cells. We report a simple platform for trapping single-cell lysates in sealed, picoliter microwells capable of printing RNA on glass or capturing RNA on beads. We then develop a scalable technology for genome-wide, single-cell RNA-Seq. Our device generates pooled libraries from hundreds of individual cells with consumable costs of $0.10?$0.20 per cell and includes five lanes for simultaneous experiments. We anticipate that this system will serve as a general platform for single-cell imaging and sequencing.Electronic supplementary material: The online version of this article (doi:10.1186/s13059-015-0684-3) contains supplementary material, which is available to authorized users.