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2015 ; 19
(6
): 354-60
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English Wikipedia
DBDiaSNP: An Open-Source Knowledgebase of Genetic Polymorphisms and Resistance
Genes Related to Diarrheal Pathogens
#MMPMID25978092
Mehla K
; Ramana J
OMICS
2015[Jun]; 19
(6
): 354-60
PMID25978092
show ga
Diarrhea is a highly common infection among children, responsible for significant
morbidity and mortality rate worldwide. After pneumonia, diarrhea remains the
second leading cause of neonatal deaths. Numerous viral, bacterial, and parasitic
enteric pathogens are associated with diarrhea. With increasing antibiotic
resistance among enteric pathogens, there is an urgent need for global
surveillance of the mutations and resistance genes primarily responsible for
resistance to antibiotic treatment. Single Nucleotide Polymorphisms are important
in this regard as they have a vast potential to be utilized as molecular
diagnostics for gene-disease or pharmacogenomics association studies linking
genotype to phenotype. DBDiaSNP is a comprehensive repository of mutations and
resistance genes among various diarrheal pathogens and hosts to advance
breakthroughs that will find applications from development of sequence-based
diagnostic tools to drug discovery. It contains information about 946 mutations
and 326 resistance genes compiled from literature and various web resources. As
of March 2015, it houses various pathogen genes and the mutations responsible for
antibiotic resistance. The pathogens include, for example, DEC (Diarrheagenic
E.coli), Salmonella spp., Campylobacter spp., Shigella spp., Clostridium
difficile, Aeromonas spp., Helicobacter pylori, Entamoeba histolytica, Vibrio
cholera, and viruses. It also includes mutations from hosts (e.g., humans, pigs,
others) that render them either susceptible or resistant to a certain type of
diarrhea. DBDiaSNP is therefore intended as an integrated open access database
for researchers and clinicians working on diarrheal diseases. Additionally, we
note that the DBDiaSNP is one of the first antibiotic resistance databases for
the diarrheal pathogens covering mutations and resistance genes that have
clinical relevance from a broad range of pathogens and hosts. For future
translational research involving integrative biology and global health, the
database offers veritable potentials, particularly for developing countries and
worldwide monitoring and personalized effective treatment of pathogens associated
with diarrhea. The database is accessible on the public domain at
http://www.juit.ac.in/attachments/dbdiasnp/ .