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10.1016/j.molcel.2015.04.006

http://scihub22266oqcxt.onion/10.1016/j.molcel.2015.04.006
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pmid26028540      Mol+Cell 2015 ; 58 (6): 1101-12
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  • Upstream Anti-sense Promoters are Hubs of Transcription Factor Binding and Active Histone Modifications #MMPMID26028540
  • Scruggs BS; Gilchrist DA; Nechaev S; Muse GW; Burkholder A; Fargo DC; Adelman K
  • Mol Cell 2015[Jun]; 58 (6): 1101-12 PMID26028540show ga
  • Anti-sense transcription originating upstream of mammalian protein-coding genes is a well-documented phenomenon, but remarkably little is known about the regulation or function of anti-sense promoters and the non-coding RNAs they generate. Here we define at nucleotide resolution the divergent transcription start sites (TSSs) near mouse mRNA genes. We find that coupled sense and anti-sense TSSs precisely define the boundaries of a nucleosome-depleted region (NDR) that is highly enriched in transcription factor (TF) motifs. Notably, as the distance between sense and anti-sense TSSs increases, so does the size of the NDR, the level of signal-dependent TF binding and gene activation. We further discover a group of anti-sense TSSs in macrophages with an enhancer-like chromatin signature. Interestingly, this signature identifies divergent promoters that are activated during immune challenge. We propose that anti-sense promoters serve as platforms for TF binding and establishment of active chromatin to further regulate or enhance sense-strand mRNA expression.
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