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2015 ; 112
(14
): 4304-9
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SWI/SNF chromatin-remodeling complexes function in noncoding RNA-dependent
assembly of nuclear bodies
#MMPMID25831520
Kawaguchi T
; Tanigawa A
; Naganuma T
; Ohkawa Y
; Souquere S
; Pierron G
; Hirose T
Proc Natl Acad Sci U S A
2015[Apr]; 112
(14
): 4304-9
PMID25831520
show ga
Paraspeckles are subnuclear structures that form around nuclear paraspeckle
assembly transcript 1 (NEAT1) long noncoding RNA (lncRNA). Recently, paraspeckles
were shown to be functional nuclear bodies involved in stress responses and the
development of specific organs. Paraspeckle formation is initiated by
transcription of the NEAT1 chromosomal locus and proceeds in conjunction with
NEAT1 lncRNA biogenesis and a subsequent assembly step involving >40 paraspeckle
proteins (PSPs). In this study, subunits of SWItch/Sucrose NonFermentable
(SWI/SNF) chromatin-remodeling complexes were identified as paraspeckle
components that interact with PSPs and NEAT1 lncRNA. EM observations revealed
that SWI/SNF complexes were enriched in paraspeckle subdomains depleted of
chromatin. Knockdown of SWI/SNF components resulted in paraspeckle
disintegration, but mutation of the ATPase domain of the catalytic subunit BRG1
did not affect paraspeckle integrity, indicating that the essential role of
SWI/SNF complexes in paraspeckle formation does not require their canonical
activity. Knockdown of SWI/SNF complexes barely affected the levels of known
essential paraspeckle components, but markedly diminished the interactions
between essential PSPs, suggesting that SWI/SNF complexes facilitate organization
of the PSP interaction network required for intact paraspeckle assembly. The
interactions between SWI/SNF components and essential PSPs were maintained in
NEAT1-depleted cells, suggesting that SWI/SNF complexes not only facilitate
interactions between PSPs, but also recruit PSPs during paraspeckle assembly.
SWI/SNF complexes were also required for Satellite III lncRNA-dependent formation
of nuclear stress bodies under heat-shock conditions. Our data suggest the
existence of a common mechanism underlying the formation of lncRNA-dependent
nuclear body architectures in mammalian cells.