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2015 ; 43
(Database issue
): D844-8
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The Candidate Cancer Gene Database: a database of cancer driver genes from
forward genetic screens in mice
#MMPMID25190456
Abbott KL
; Nyre ET
; Abrahante J
; Ho YY
; Isaksson Vogel R
; Starr TK
Nucleic Acids Res
2015[Jan]; 43
(Database issue
): D844-8
PMID25190456
show ga
Identification of cancer driver gene mutations is crucial for advancing cancer
therapeutics. Due to the overwhelming number of passenger mutations in the human
tumor genome, it is difficult to pinpoint causative driver genes. Using
transposon mutagenesis in mice many laboratories have conducted forward genetic
screens and identified thousands of candidate driver genes that are highly
relevant to human cancer. Unfortunately, this information is difficult to access
and utilize because it is scattered across multiple publications using different
mouse genome builds and strength metrics. To improve access to these findings and
facilitate meta-analyses, we developed the Candidate Cancer Gene Database (CCGD,
http://ccgd-starrlab.oit.umn.edu/). The CCGD is a manually curated database
containing a unified description of all identified candidate driver genes and the
genomic location of transposon common insertion sites (CISs) from all currently
published transposon-based screens. To demonstrate relevance to human cancer, we
performed a modified gene set enrichment analysis using KEGG pathways and show
that human cancer pathways are highly enriched in the database. We also used
hierarchical clustering to identify pathways enriched in blood cancers compared
to solid cancers. The CCGD is a novel resource available to scientists interested
in the identification of genetic drivers of cancer.