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Deprecated: Implicit conversion from float 245.2 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Curr+Protoc+Bioinformatics 2014 ; 46 (ä): 13.25.1-13.25.28 Nephropedia Template TP
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Using PeptideAtlas, SRMAtlas and PASSEL ? Comprehensive Resources for discovery and targeted proteomics #MMPMID24939129
Kusebauch U; Deutsch EW; Campbell DS; Sun Z; Farrah T; Moritz RL
Curr Protoc Bioinformatics 2014[]; 46 (ä): 13.25.1-13.25.28 PMID24939129show ga
PeptideAtlas, SRMAtlas and PASSEL are web-accessible resources to support discovery and targeted proteomics research. PeptideAtlas is a multi-species compendium of shotgun proteomic data provided by the scientific community, SRMAtlas is a resource of high-quality, complete proteome SRM assays generated in a consistent manner for the targeted identification and quantification of proteins, and PASSEL is a repository that compiles and represents selected reaction monitoring data, all in an easy to use interface. The databases are generated from native mass spectrometry data files that are analyzed in a standardized manner including statistical validation of the results. Each resource offers search functionalities and can be queried by user defined constraints; the query results are provided in tables or are graphically displayed. PeptideAtlas, SRMAtlas and PASSEL are publicly available freely via the website http://www.peptideatlas.org. In this protocol, we describe the use of these resources, we highlight how to submit, search, collate and download data.