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2014 ; 15
(12
): 21825-39
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Real-time qPCR identifies suitable reference genes for Borna disease
virus-infected rat cortical neurons
#MMPMID25431926
Zhang L
; Liu S
; Zhang L
; You H
; Huang R
; Sun L
; He P
; Chen S
; Zhang H
; Xie P
Int J Mol Sci
2014[Nov]; 15
(12
): 21825-39
PMID25431926
show ga
Quantitative real-time reverse transcription polymerase chain reaction (RT-qPCR)
is the most commonly-used technique to identify gene expression profiles. The
selection of stably expressed reference genes is a prerequisite to properly
evaluating gene expression. Here, the suitability of commonly-used reference
genes in normalizing RT-qPCR assays of mRNA expression in cultured rat cortical
neurons infected with Borna disease virus (BDV) was assessed. The expressions of
eight commonly-used reference genes were comparatively analyzed in BDV-infected
rat cortical neurons and non-infected control neurons mainly across 9 and 12 days
post-infection. These reference genes were validated by RT-qPCR and separately
ranked by four statistical algorithms: geNorm, NormFinder, BestKeeper and the
comparative delta-Ct method. Then, the RankAggreg package was used to construct
consensus rankings. ARBP was found to be the most stable internal control gene at
Day 9, and ACTB at Day 12. As the assessment of the validity of the selected
reference genes confirms the suitability of applying a combination of the two
most stable references genes, combining the two most stable genes for
normalization of RT-qPCR studies in BDV-infected rat cortical neurons is
recommended at each time point. This study can contribute to improving BDV
research by providing the means by which to obtain more reliable and accurate
gene expression measurements.