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10.1016/j.cell.2014.08.028

http://scihub22266oqcxt.onion/10.1016/j.cell.2014.08.028
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C4180118!4180118!25219674
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suck abstract from ncbi


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pmid25219674      Cell 2014 ; 159 (1): 148-62
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  • Transcriptome-wide mapping reveals widespread dynamic regulated pseudouridylation of ncRNA and mRNA #MMPMID25219674
  • Schwartz S; Bernstein DA; Mumbach MR; Jovanovic M; Herbst RH; León-Ricardo BX; Engreitz JM; Guttman M; Satija R; Lander ES; Fink G; Regev A
  • Cell 2014[Sep]; 159 (1): 148-62 PMID25219674show ga
  • Pseudouridine is the most abundant RNA modification, yet except for a few well-studied cases, little is known about the modified positions and their function(s). Here, we develop ?-seq for transcriptome-wide quantitative mapping of pseudouridine. We validate ?-seq with spike-ins and de novo identification of previously reported positions and discover hundreds of novel sites in human and yeast mRNAs and snoRNAs. Perturbing pseudouridine synthases (PUSs) uncovers which PUSs modify each site and their target sequence features. mRNA pseudouridinylation depends on both site-specific and snoRNA-guided PUSs. Upon heat shock in yeast, Pus7-mediated pseudouridylation is induced at >200 sites and Pus7 deletion decreases the levels of otherwise pseudouridylated mRNA, suggesting a role in enhancing transcript stability. rRNA pseudouridine stoichiometries are conserved, but reduced in cells from dyskeratosis congenita patients, where the PUS DKC1 is mutated. Our work identifies an enhanced, transcritome-wide scope for pseudouridine, and methods to dissect its underlying mechanisms and function.
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