Deprecated: Implicit conversion from float 217.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534
Deprecated: Implicit conversion from float 217.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534
Deprecated: Implicit conversion from float 217.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534
Deprecated: Implicit conversion from float 217.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534
Deprecated: Implicit conversion from float 217.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534
Deprecated: Implicit conversion from float 217.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534
Deprecated: Implicit conversion from float 251.2 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534
Deprecated: Implicit conversion from float 251.2 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534
Deprecated: Implicit conversion from float 251.2 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534
Warning: imagejpeg(C:\Inetpub\vhosts\kidney.de\httpdocs\phplern\25043884
.jpg): Failed to open stream: No such file or directory in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 117 Genet+Epidemiol
2014 ; 38
(6
): 483-93
Nephropedia Template TP
gab.com Text
Twit Text FOAVip
Twit Text #
English Wikipedia
X-chromosome genetic association test accounting for X-inactivation, skewed
X-inactivation, and escape from X-inactivation
#MMPMID25043884
Wang J
; Yu R
; Shete S
Genet Epidemiol
2014[Sep]; 38
(6
): 483-93
PMID25043884
show ga
X-chromosome inactivation (XCI) is the process in which one of the two copies of
the X-chromosome in females is randomly inactivated to achieve the dosage
compensation of X-linked genes between males and females. That is, 50% of the
cells have one allele inactive and the other 50% of the cells have the other
allele inactive. However, studies have shown that skewed or nonrandom XCI is a
biological plausibility wherein more than 75% of cells have the same allele
inactive. Also, some of the X-chromosome genes escape XCI, i.e., both alleles are
active in all cells. Current statistical tests for X-chromosome association
studies can either account for random XCI (e.g., Clayton's approach) or escape
from XCI (e.g., PLINK software). Because the true XCI process is unknown and
differs across different regions on the X-chromosome, we proposed a unified
approach of maximizing likelihood ratio over all biological possibilities: random
XCI, skewed XCI, and escape from XCI. A permutation-based procedure was developed
to assess the significance of the approach. We conducted simulation studies to
compare the performance of the proposed approach with Clayton's approach and
PLINK regression. The results showed that the proposed approach has higher powers
in the scenarios where XCI is skewed while losing some power in scenarios where
XCI is random or XCI is escaped, with well-controlled type I errors. We also
applied the approach to the X-chromosomal genetic association study of head and
neck cancer.
|*Chromosomes, Human, X
[MESH]
|*Models, Genetic
[MESH]
|Alleles
[MESH]
|Female
[MESH]
|Genome-Wide Association Study
[MESH]
|Head and Neck Neoplasms/genetics/pathology
[MESH]