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10.1186/gb-2013-14-11-r124

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suck abstract from ncbi


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pmid24200198
      Genome+Biol 2013 ; 14 (11 ): R124
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  • AHT-ChIP-seq: a completely automated robotic protocol for high-throughput chromatin immunoprecipitation #MMPMID24200198
  • Aldridge S ; Watt S ; Quail MA ; Rayner T ; Lukk M ; Bimson MF ; Gaffney D ; Odom DT
  • Genome Biol 2013[Nov]; 14 (11 ): R124 PMID24200198 show ga
  • ChIP-seq is an established manually-performed method for identifying DNA-protein interactions genome-wide. Here, we describe a protocol for automated high-throughput (AHT) ChIP-seq. To demonstrate the quality of data obtained using AHT-ChIP-seq, we applied it to five proteins in mouse livers using a single 96-well plate, demonstrating an extremely high degree of qualitative and quantitative reproducibility among biological and technical replicates. We estimated the optimum and minimum recommended cell numbers required to perform AHT-ChIP-seq by running an additional plate using HepG2 and MCF7 cells. With this protocol, commercially available robotics can perform four hundred experiments in five days.
  • |Animals [MESH]
  • |Chromatin Immunoprecipitation/instrumentation/*methods [MESH]
  • |Hep G2 Cells [MESH]
  • |High-Throughput Nucleotide Sequencing/instrumentation/*methods [MESH]
  • |Humans [MESH]
  • |Liver/metabolism [MESH]
  • |MCF-7 Cells [MESH]
  • |Male [MESH]
  • |Mice [MESH]
  • |Mice, Inbred C57BL [MESH]
  • |Reproducibility of Results [MESH]
  • |Robotics/instrumentation/*methods [MESH]


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