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2013 ; 14
(11
): R124
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AHT-ChIP-seq: a completely automated robotic protocol for high-throughput
chromatin immunoprecipitation
#MMPMID24200198
Aldridge S
; Watt S
; Quail MA
; Rayner T
; Lukk M
; Bimson MF
; Gaffney D
; Odom DT
Genome Biol
2013[Nov]; 14
(11
): R124
PMID24200198
show ga
ChIP-seq is an established manually-performed method for identifying DNA-protein
interactions genome-wide. Here, we describe a protocol for automated
high-throughput (AHT) ChIP-seq. To demonstrate the quality of data obtained using
AHT-ChIP-seq, we applied it to five proteins in mouse livers using a single
96-well plate, demonstrating an extremely high degree of qualitative and
quantitative reproducibility among biological and technical replicates. We
estimated the optimum and minimum recommended cell numbers required to perform
AHT-ChIP-seq by running an additional plate using HepG2 and MCF7 cells. With this
protocol, commercially available robotics can perform four hundred experiments in
five days.