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2013 ; 112
(12
): 1613-23
Nephropedia Template TP
gab.com Text
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English Wikipedia
Overview of high throughput sequencing technologies to elucidate molecular
pathways in cardiovascular diseases
#MMPMID23743227
Churko JM
; Mantalas GL
; Snyder MP
; Wu JC
Circ Res
2013[Jun]; 112
(12
): 1613-23
PMID23743227
show ga
High throughput sequencing technologies have become essential in studies on
genomics, epigenomics, and transcriptomics. Although sequencing information has
traditionally been elucidated using a low throughput technique called Sanger
sequencing, high throughput sequencing technologies are capable of sequencing
multiple DNA molecules in parallel, enabling hundreds of millions of DNA
molecules to be sequenced at a time. This advantage allows high throughput
sequencing to be used to create large data sets, generating more comprehensive
insights into the cellular genomic and transcriptomic signatures of various
diseases and developmental stages. Within high throughput sequencing
technologies, whole exome sequencing can be used to identify novel variants and
other mutations that may underlie many genetic cardiac disorders, whereas RNA
sequencing can be used to analyze how the transcriptome changes. Chromatin
immunoprecipitation sequencing and methylation sequencing can be used to identify
epigenetic changes, whereas ribosome sequencing can be used to determine which
mRNA transcripts are actively being translated. In this review, we will outline
the differences in various sequencing modalities and examine the main sequencing
platforms on the market in terms of their relative read depths, speeds, and
costs. Finally, we will discuss the development of future sequencing platforms
and how these new technologies may improve on current sequencing platforms.
Ultimately, these sequencing technologies will be instrumental in further
delineating how the cardiovascular system develops and how perturbations in DNA
and RNA can lead to cardiovascular disease.