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2013 ; 158
(6
): 1425-32
Nephropedia Template TP
gab.com Text
Twit Text FOAVip
Twit Text #
English Wikipedia
Virus nomenclature below the species level: a standardized nomenclature for
laboratory animal-adapted strains and variants of viruses assigned to the family
Filoviridae
#MMPMID23358612
Kuhn JH
; Bao Y
; Bavari S
; Becker S
; Bradfute S
; Brister JR
; Bukreyev AA
; Caì Y
; Chandran K
; Davey RA
; Dolnik O
; Dye JM
; Enterlein S
; Gonzalez JP
; Formenty P
; Freiberg AN
; Hensley LE
; Honko AN
; Ignatyev GM
; Jahrling PB
; Johnson KM
; Klenk HD
; Kobinger G
; Lackemeyer MG
; Leroy EM
; Lever MS
; Lofts LL
; Mühlberger E
; Netesov SV
; Olinger GG
; Palacios G
; Patterson JL
; Paweska JT
; Pitt L
; Radoshitzky SR
; Ryabchikova EI
; Saphire EO
; Shestopalov AM
; Smither SJ
; Sullivan NJ
; Swanepoel R
; Takada A
; Towner JS
; van der Groen G
; Volchkov VE
; Wahl-Jensen V
; Warren TK
; Warfield KL
; Weidmann M
; Nichol ST
Arch Virol
2013[Jun]; 158
(6
): 1425-32
PMID23358612
show ga
The International Committee on Taxonomy of Viruses (ICTV) organizes the
classification of viruses into taxa, but is not responsible for the nomenclature
for taxa members. International experts groups, such as the ICTV Study Groups,
recommend the classification and naming of viruses and their strains, variants,
and isolates. The ICTV Filoviridae Study Group has recently introduced an updated
classification and nomenclature for filoviruses. Subsequently, and together with
numerous other filovirus experts, a consistent nomenclature for their natural
genetic variants and isolates was developed that aims at simplifying the
retrieval of sequence data from electronic databases. This is a first important
step toward a viral genome annotation standard as sought by the US National
Center for Biotechnology Information (NCBI). Here, this work is extended to
include filoviruses obtained in the laboratory by artificial selection through
passage in laboratory hosts. The previously developed template for natural
filovirus genetic variant naming (///-) is retained, but it is proposed to adapt the type of information
added to each field for laboratory animal-adapted variants. For instance, the
full-length designation of an Ebola virus Mayinga variant adapted at the State
Research Center for Virology and Biotechnology ?Vector? to cause disease in
guinea pigs after seven passages would be akin to ?Ebola virus
VECTOR/C.porcellus-lab/COD/1976/Mayinga-GPA-P7?. As was proposed for the names of
natural filovirus variants, we suggest using the full-length designation in
databases, as well as in the method section of publications. Shortened
designations (such as ?EBOV VECTOR/C.por/COD/76/May-GPA-P7?) and abbreviations
(such as ?EBOV/May-GPA-P7?) could be used in the remainder of the text depending
on how critical it is to convey information contained in the full-length name.
?EBOV? would suffice if only one EBOV strain/variant/isolate is addressed.