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2013 ; 5
(2
): 207-215
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Simulation and Modeling of Crowding Effects on the Thermodynamic and Kinetic
Properties of Proteins with Atomic Details
#MMPMID23710260
Zhou HX
; Qin S
Biophys Rev
2013[Jun]; 5
(2
): 207-215
PMID23710260
show ga
Recent experimental studies of protein folding and binding under crowded
solutions suggest that crowding agents exert subtle influences on the
thermodynamic and kinetic properties of the proteins. While some of the crowding
effects can be understood qualitatively from simple models of the proteins,
quantitative rationalization of these effects requires an atomistic
representation of the protein molecules in modeling their interactions with
crowders. A computational approach, known as postprocessing, has opened the door
for atomistic modeling of crowding effects. This review summarizes the
applications of the postprocessing approach for studying crowding effects on the
thermodynamics and kinetics of protein folding, conformational transition, and
binding. The integration of atomistic modeling with experiments in crowded
solutions promises new insight into biochemical processes in cellular
environments.