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2025 ; 26
(1
): 266
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RoAM: computational reconstruction of ancient methylomes and identification of
differentially methylated regions
#MMPMID40908480
Mathov Y
; Rosen N
; Leibson C
; Meshorer E
; Yakir B
; Carmel L
Genome Biol
2025[Sep]; 26
(1
): 266
PMID40908480
show ga
We present a new and considerably improved version of RoAM (Reconstruction of
Ancient Methylation), a flexible tool for reconstructing ancient methylomes and
identifying differentially methylated regions (DMRs) between populations. Through
a series of filtering and quality control steps, RoAM produces highly reliable
DNA methylation maps, making it a valuable tool for paleoepigenomics studies. We
apply RoAM to pre-and post-Neolithic transition Balkan samples, and uncover DMRs
in genes related to sugar metabolism. Notably, we observe post-Neolithic
hypermethylation of PTPRN2, a regulator of insulin secretion. These results are
compatible with hypoinsulinism in pre-Neolithic hunter-gatherers.