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10.1007/978-1-0716-2115-8_20

http://scihub22266oqcxt.onion/10.1007/978-1-0716-2115-8_20
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suck abstract from ncbi


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pmid35622336      Methods+Mol+Biol 2022 ; 2453 (ä): 379-421
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  • Single-Cell Analysis and Tracking of Antigen-Specific T Cells: Integrating Paired Chain AIRR-Seq and Transcriptome Sequencing: A Method by the AIRR Community #MMPMID35622336
  • Gupta N; Lindeman I; Reinhardt S; Mariotti-Ferrandiz E; Mujangi-Ebeka K; Martins-Taylor K; Eugster A
  • Methods Mol Biol 2022[]; 2453 (ä): 379-421 PMID35622336show ga
  • Single-cell adaptive immune receptor repertoire sequencing (scAIRR-seq) offers the possibility to access the nucleotide sequences of paired receptor chains from T-cell receptors (TCR) or B-cell receptors (BCR ). Here we describe two protocols and the downstream bioinformatic approaches that facilitate the integrated analysis of paired T-cell receptor (TR ) alpha/beta (TRA /TRB ) AIRR-seq, RNA sequencing (RNAseq), immunophenotyping, and antigen-binding information. To illustrate the methodologies with a use case, we describe how to identify, characterize, and track SARS-CoV-2-specific T cells over multiple time points following infection with the virus. The first method allows the analysis of pools of memory CD8(+) cells, identifying expansions and contractions of clones of interest. The second method allows the study of rare or antigen-specific cells and allows studying their changes over time.
  • |*COVID-19[MESH]
  • |*Single-Cell Analysis/methods[MESH]
  • |Base Sequence[MESH]
  • |Humans[MESH]
  • |Receptors, Antigen, T-Cell/genetics[MESH]
  • |SARS-CoV-2/genetics[MESH]


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