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10.1016/j.xcrm.2022.100522

http://scihub22266oqcxt.onion/10.1016/j.xcrm.2022.100522
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suck abstract from ncbi


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pmid35233546      Cell+Rep+Med 2022 ; 3 (2): 100522
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  • System-wide transcriptome damage and tissue identity loss in COVID-19 patients #MMPMID35233546
  • Park J; Foox J; Hether T; Danko DC; Warren S; Kim Y; Reeves J; Butler DJ; Mozsary C; Rosiene J; Shaiber A; Afshin EE; MacKay M; Rendeiro AF; Bram Y; Chandar V; Geiger H; Craney A; Velu P; Melnick AM; Hajirasouliha I; Beheshti A; Taylor D; Saravia-Butler A; Singh U; Wurtele ES; Schisler J; Fennessey S; Corvelo A; Zody MC; Germer S; Salvatore S; Levy S; Wu S; Tatonetti NP; Shapira S; Salvatore M; Westblade LF; Cushing M; Rennert H; Kriegel AJ; Elemento O; Imielinski M; Rice CM; Borczuk AC; Meydan C; Schwartz RE; Mason CE
  • Cell Rep Med 2022[Feb]; 3 (2): 100522 PMID35233546show ga
  • The molecular mechanisms underlying the clinical manifestations of coronavirus disease 2019 (COVID-19), and what distinguishes them from common seasonal influenza virus and other lung injury states such as acute respiratory distress syndrome, remain poorly understood. To address these challenges, we combine transcriptional profiling of 646 clinical nasopharyngeal swabs and 39 patient autopsy tissues to define body-wide transcriptome changes in response to COVID-19. We then match these data with spatial protein and expression profiling across 357 tissue sections from 16 representative patient lung samples and identify tissue-compartment-specific damage wrought by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection, evident as a function of varying viral loads during the clinical course of infection and tissue-type-specific expression states. Overall, our findings reveal a systemic disruption of canonical cellular and transcriptional pathways across all tissues, which can inform subsequent studies to combat the mortality of COVID-19 and to better understand the molecular dynamics of lethal SARS-CoV-2 and other respiratory infections.
  • |*SARS-CoV-2[MESH]
  • |Adult[MESH]
  • |Aged[MESH]
  • |Aged, 80 and over[MESH]
  • |COVID-19/*genetics/metabolism/*pathology/virology[MESH]
  • |Case-Control Studies[MESH]
  • |Cohort Studies[MESH]
  • |Female[MESH]
  • |Gene Expression Regulation[MESH]
  • |Humans[MESH]
  • |Influenza, Human/genetics/pathology/virology[MESH]
  • |Lung/metabolism/*pathology[MESH]
  • |Male[MESH]
  • |Middle Aged[MESH]
  • |Orthomyxoviridae[MESH]
  • |RNA-Seq/methods[MESH]
  • |Respiratory Distress Syndrome/genetics/microbiology/pathology[MESH]
  • |Transcriptome/*genetics[MESH]


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