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10.1093/nar/gkab1226

http://scihub22266oqcxt.onion/10.1093/nar/gkab1226
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34908151!8789046!34908151
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suck abstract from ncbi


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pmid34908151      Nucleic+Acids+Res 2022 ; 50 (2): 1017-1032
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  • Highly conserved s2m element of SARS-CoV-2 dimerizes via a kissing complex and interacts with host miRNA-1307-3p #MMPMID34908151
  • Imperatore JA; Cunningham CL; Pellegrene KA; Brinson RG; Marino JP; Evanseck JD; Mihailescu MR
  • Nucleic Acids Res 2022[Jan]; 50 (2): 1017-1032 PMID34908151show ga
  • The ongoing COVID-19 pandemic highlights the necessity for a more fundamental understanding of the coronavirus life cycle. The causative agent of the disease, SARS-CoV-2, is being studied extensively from a structural standpoint in order to gain insight into key molecular mechanisms required for its survival. Contained within the untranslated regions of the SARS-CoV-2 genome are various conserved stem-loop elements that are believed to function in RNA replication, viral protein translation, and discontinuous transcription. While the majority of these regions are variable in sequence, a 41-nucleotide s2m element within the genome 3' untranslated region is highly conserved among coronaviruses and three other viral families. In this study, we demonstrate that the SARS-CoV-2 s2m element dimerizes by forming an intermediate homodimeric kissing complex structure that is subsequently converted to a thermodynamically stable duplex conformation. This process is aided by the viral nucleocapsid protein, potentially indicating a role in mediating genome dimerization. Furthermore, we demonstrate that the s2m element interacts with multiple copies of host cellular microRNA (miRNA) 1307-3p. Taken together, our results highlight the potential significance of the dimer structures formed by the s2m element in key biological processes and implicate the motif as a possible therapeutic drug target for COVID-19 and other coronavirus-related diseases.
  • |3' Untranslated Regions/*genetics[MESH]
  • |Base Sequence[MESH]
  • |Binding Sites/genetics[MESH]
  • |COVID-19/*genetics/metabolism/virology[MESH]
  • |Conserved Sequence/genetics[MESH]
  • |Dimerization[MESH]
  • |Genome, Viral/genetics[MESH]
  • |Host-Pathogen Interactions/genetics[MESH]
  • |Humans[MESH]
  • |MicroRNAs/*genetics/metabolism[MESH]
  • |Nucleic Acid Conformation[MESH]
  • |Nucleotide Motifs/*genetics[MESH]
  • |Proton Magnetic Resonance Spectroscopy/methods[MESH]
  • |RNA, Viral/chemistry/*genetics/metabolism[MESH]


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