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Deprecated: Implicit conversion from float 211.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 J+Chem+Inf+Model 2021 ; 61 (11): 5589-5600 Nephropedia Template TP
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Navigating Chemical Space by Interfacing Generative Artificial Intelligence and Molecular Docking #MMPMID34633194
Xu Z; Wauchope OR; Frank AT
J Chem Inf Model 2021[Nov]; 61 (11): 5589-5600 PMID34633194show ga
Here, we report the implementation and application of a simple, structure-aware framework to generate target-specific screening libraries. Our approach combines advances in generative artificial intelligence (AI) with conventional molecular docking to explore chemical space conditioned on the unique physicochemical properties of the active site of a biomolecular target. As a demonstration, we used our framework, which we refer to as sample-and-dock, to construct focused libraries for cyclin-dependent kinase type-2 (CDK2) and the active site of the main protease (M(pro)) of the SARS-CoV-2 virus. We envision that the sample-and-dock framework could be used to generate theoretical maps of the chemical space specific to a given target and so provide information about its molecular recognition characteristics.