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10.3389/fimmu.2021.725240

http://scihub22266oqcxt.onion/10.3389/fimmu.2021.725240
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suck abstract from ncbi


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pmid34630400      Front+Immunol 2021 ; 12 (ä): 725240
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  • Identification of Unique Peptides for SARS-CoV-2 Diagnostics and Vaccine Development by an In Silico Proteomics Approach #MMPMID34630400
  • Kesarwani V; Gupta R; Vetukuri RR; Kushwaha SK; Gandhi S
  • Front Immunol 2021[]; 12 (ä): 725240 PMID34630400show ga
  • Ongoing evolution of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus strains is posing new COVID-19 diagnosis and treatment challenges. To help efforts to meet these challenges we examined data acquired from proteomic analyses of human SARS-CoV-2-infected cell lines and samples from COVID-19 patients. Initially, 129 unique peptides were identified, which were rigorously evaluated for repeats, disorders, polymorphisms, antigenicity, immunogenicity, toxicity, allergens, sequence similarity to human proteins, and contributions from other potential cross-reacting pathogenic species or the human saliva microbiome. We also screened SARS-CoV-2-infected NBHE and A549 cell lines for presence of antigenic peptides, and identified paratope peptides from crystal structures of SARS-CoV-2 antigen-antibody complexes. We then selected four antigen peptides for docking with known viral unbound T-cell receptor (TCR), class I and II peptide major histocompatibility complex (pMHC), and identified paratope sequences. We also tested the paratope binding affinity of SARS-CoV T- and B-cell peptides that had been previously experimentally validated. The resultant antigenic peptides have high potential for generating SARS-CoV-2-specific antibodies, and the paratope peptides can be directly used to develop a COVID-19 diagnostics assay. The presented genomics and proteomics-based in-silico approaches have apparent utility for identifying new diagnostic peptides that could be used to fight SARS-CoV-2.
  • |A549 Cells[MESH]
  • |COVID-19 Vaccines/*immunology[MESH]
  • |COVID-19/*diagnosis/immunology[MESH]
  • |Cell Line[MESH]
  • |Coronavirus Nucleocapsid Proteins/genetics/*metabolism[MESH]
  • |Epitope Mapping[MESH]
  • |Epitopes, B-Lymphocyte/genetics/*metabolism[MESH]
  • |Epitopes, T-Lymphocyte/genetics/*metabolism[MESH]
  • |HLA Antigens/metabolism[MESH]
  • |Humans[MESH]
  • |Molecular Docking Simulation[MESH]
  • |Peptides/genetics/*metabolism[MESH]
  • |Phosphoproteins/genetics/metabolism[MESH]
  • |Protein Binding[MESH]
  • |Proteomics[MESH]
  • |Pulmonary Alveoli/*pathology[MESH]
  • |Receptors, Antigen/metabolism[MESH]
  • |SARS-CoV-2/*physiology[MESH]


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