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10.1016/j.ijbiomac.2021.09.018

http://scihub22266oqcxt.onion/10.1016/j.ijbiomac.2021.09.018
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suck abstract from ncbi


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pmid34517025      Int+J+Biol+Macromol 2021 ; 190 (ä): 636-648
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  • Genomics-guided targeting of stress granule proteins G3BP1/2 to inhibit SARS-CoV-2 propagation #MMPMID34517025
  • Ali N; Prasad K; AlAsmari AF; Alharbi M; Rashid S; Kumar V
  • Int J Biol Macromol 2021[Nov]; 190 (ä): 636-648 PMID34517025show ga
  • SARS-CoV-2 nucleocapsid (N) protein undergoes RNA-induced phase separation (LLPS) and sequesters the host key stress granule (SG) proteins, Ras-GTPase-activating protein SH3-domain-binding protein 1 and 2 (G3BP1 and G3BP2) to inhibit SG formation. This will allow viral packaging and propagation in host cells. Based on a genomic-guided meta-analysis, here we identify upstream regulatory elements modulating the expression of G3BP1 and G3BP2 (collectively called G3BP1/2). Using this strategy, we have identified FOXA1, YY1, SYK, E2F-1, and TGFBR2 as activators and SIN3A, SRF, and AKT-1 as repressors of G3BP1/2 genes. Panels of the activators and repressors were then used to identify drugs that change their gene expression signatures. Two drugs, imatinib, and decitabine have been identified as putative modulators of G3BP1/2 genes and their regulators, suggesting their role as COVID-19 mitigation agents. Molecular docking analysis suggests that both drugs bind to G3BP1/2 with a much higher affinity than the SARS-CoV-2 N protein. This study reports imatinib and decitabine as candidate drugs against N protein and G3BP1/2 protein.
  • |*COVID-19 Drug Treatment[MESH]
  • |*Molecular Docking Simulation[MESH]
  • |*Molecular Dynamics Simulation[MESH]
  • |Adaptor Proteins, Signal Transducing/antagonists & inhibitors/*chemistry/metabolism[MESH]
  • |COVID-19/metabolism[MESH]
  • |Coronavirus Nucleocapsid Proteins/*chemistry/metabolism[MESH]
  • |DNA Helicases/antagonists & inhibitors/*chemistry/metabolism[MESH]
  • |Decitabine/*chemistry/pharmacology[MESH]
  • |Drug Delivery Systems[MESH]
  • |Genomics[MESH]
  • |Imatinib Mesylate/*chemistry/pharmacology[MESH]
  • |Phosphoproteins/chemistry/metabolism[MESH]
  • |Poly-ADP-Ribose Binding Proteins/antagonists & inhibitors/*chemistry/metabolism[MESH]
  • |RNA Helicases/antagonists & inhibitors/*chemistry/metabolism[MESH]
  • |RNA Recognition Motif Proteins/antagonists & inhibitors/*chemistry/metabolism[MESH]
  • |RNA-Binding Proteins/antagonists & inhibitors/*chemistry/metabolism[MESH]


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