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10.1038/s41564-021-00961-5

http://scihub22266oqcxt.onion/10.1038/s41564-021-00961-5
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suck abstract from ncbi


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pmid34465900      Nat+Microbiol 2021 ; 6 (10): 1245-1258
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  • Microbial signatures in the lower airways of mechanically ventilated COVID-19 patients associated with poor clinical outcome #MMPMID34465900
  • Sulaiman I; Chung M; Angel L; Tsay JJ; Wu BG; Yeung ST; Krolikowski K; Li Y; Duerr R; Schluger R; Thannickal SA; Koide A; Rafeq S; Barnett C; Postelnicu R; Wang C; Banakis S; Perez-Perez L; Shen G; Jour G; Meyn P; Carpenito J; Liu X; Ji K; Collazo D; Labarbiera A; Amoroso N; Brosnahan S; Mukherjee V; Kaufman D; Bakker J; Lubinsky A; Pradhan D; Sterman DH; Weiden M; Heguy A; Evans L; Uyeki TM; Clemente JC; de Wit E; Schmidt AM; Shopsin B; Desvignes L; Wang C; Li H; Zhang B; Forst CV; Koide S; Stapleford KA; Khanna KM; Ghedin E; Segal LN
  • Nat Microbiol 2021[Oct]; 6 (10): 1245-1258 PMID34465900show ga
  • Respiratory failure is associated with increased mortality in COVID-19 patients. There are no validated lower airway biomarkers to predict clinical outcome. We investigated whether bacterial respiratory infections were associated with poor clinical outcome of COVID-19 in a prospective, observational cohort of 589 critically ill adults, all of whom required mechanical ventilation. For a subset of 142 patients who underwent bronchoscopy, we quantified SARS-CoV-2 viral load, analysed the lower respiratory tract microbiome using metagenomics and metatranscriptomics and profiled the host immune response. Acquisition of a hospital-acquired respiratory pathogen was not associated with fatal outcome. Poor clinical outcome was associated with lower airway enrichment with an oral commensal (Mycoplasma salivarium). Increased SARS-CoV-2 abundance, low anti-SARS-CoV-2 antibody response and a distinct host transcriptome profile of the lower airways were most predictive of mortality. Our data provide evidence that secondary respiratory infections do not drive mortality in COVID-19 and clinical management strategies should prioritize reducing viral replication and maximizing host responses to SARS-CoV-2.
  • |*Respiration, Artificial[MESH]
  • |Adaptive Immunity[MESH]
  • |Adult[MESH]
  • |Aged[MESH]
  • |Bacteria/classification/genetics/isolation & purification[MESH]
  • |Bacterial Load[MESH]
  • |Bronchoalveolar Lavage Fluid/immunology/*microbiology/virology[MESH]
  • |COVID-19/immunology/microbiology/mortality/*therapy[MESH]
  • |Critical Illness[MESH]
  • |Female[MESH]
  • |Hospitalization[MESH]
  • |Humans[MESH]
  • |Immunity, Innate[MESH]
  • |Male[MESH]
  • |Microbiota[MESH]
  • |Middle Aged[MESH]
  • |Odds Ratio[MESH]
  • |Prognosis[MESH]
  • |Prospective Studies[MESH]
  • |Respiratory System/immunology/microbiology/virology[MESH]
  • |SARS-CoV-2/immunology/*pathogenicity[MESH]


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