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10.1007/978-1-0716-1518-8_8

http://scihub22266oqcxt.onion/10.1007/978-1-0716-1518-8_8
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34410643!ä!34410643

suck abstract from ncbi


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pmid34410643      Methods+Mol+Biol 2021 ; 2327 (ä): 119-137
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  • Whole-Genome Sequencing of Pathogens in Saliva : A Target-Enrichment Approach for SARS-CoV-2 #MMPMID34410643
  • Speicher DJ; Nasir JA; Zhou P; Anderson DE
  • Methods Mol Biol 2021[]; 2327 (ä): 119-137 PMID34410643show ga
  • Outbreak analysis and transmission surveillance of viruses can be performed via whole-genome sequencing after viral isolation. Such techniques have recently been applied to characterize and monitor SARS-CoV-2 , the etiological agent of the COVID-19 pandemic. However, the isolation and culture of SARS-CoV-2 is time consuming and requires biosafety level 3 containment, which is not ideal for many resource-constrained settings. An alternate method, bait capture allows target enrichment and sequencing of the entire SARS-CoV-2 genome eliminating the need for viral culture. This method uses a set of hybridization probes known as "baits" that span the genome and provide sensitive, accurate, and minimal off-target hybridization. Baits can be designed to detect any known virus or bacteria in a wide variety of specimen types, including oral secretions. The bait capture method presented herein allows the whole genome of SARS-CoV-2 in saliva to be sequenced without the need to culture and provides an outline of bait design and bioinformatic analysis to guide a bioinformatician.
  • |*Genome, Viral[MESH]
  • |Computational Biology[MESH]
  • |DNA, Complementary/genetics[MESH]
  • |Humans[MESH]
  • |Molecular Probes/genetics[MESH]
  • |Polymerase Chain Reaction/methods[MESH]
  • |SARS-CoV-2/*genetics/isolation & purification[MESH]
  • |Saliva/*virology[MESH]
  • |Specimen Handling/methods[MESH]
  • |Streptavidin[MESH]


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