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10.1002/1873-3468.14182

http://scihub22266oqcxt.onion/10.1002/1873-3468.14182
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34409597!8426738!34409597
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suck abstract from ncbi


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pmid34409597      FEBS+Lett 2021 ; 595 (18): 2366-2382
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  • Interface-based design of the favipiravir-binding site in SARS-CoV-2 RNA-dependent RNA polymerase reveals mutations conferring resistance to chain termination #MMPMID34409597
  • Padhi AK; Dandapat J; Saudagar P; Uversky VN; Tripathi T
  • FEBS Lett 2021[Sep]; 595 (18): 2366-2382 PMID34409597show ga
  • Favipiravir is a broad-spectrum inhibitor of viral RNA-dependent RNA polymerase (RdRp) currently being used to manage COVID-19. Accumulation of mutations in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) RdRp may facilitate antigenic drift, generating favipiravir resistance. Focussing on the chain-termination mechanism utilized by favipiravir, we used high-throughput interface-based protein design to generate > 100 000 designs of the favipiravir-binding site of RdRp and identify mutational hotspots. We identified several single-point mutants and designs having a sequence identity of 97%-98% with wild-type RdRp, suggesting that SARS-CoV-2 can develop favipiravir resistance with few mutations. Out of 134 mutations documented in the CoV-GLUE database, 63 specific mutations were already predicted as resistant in our calculations, thus attaining 47% correlation with the sequencing data. These findings improve our understanding of the potential signatures of adaptation in SARS-CoV-2 against favipiravir.
  • |Amides/*pharmacology[MESH]
  • |Antiviral Agents/*pharmacology[MESH]
  • |Drug Resistance, Viral/genetics[MESH]
  • |Mutation/genetics[MESH]
  • |Point Mutation/genetics[MESH]
  • |Pyrazines/*pharmacology[MESH]
  • |RNA, Viral/*genetics[MESH]
  • |RNA-Dependent RNA Polymerase/*genetics[MESH]


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