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10.1016/j.diagmicrobio.2021.115508

http://scihub22266oqcxt.onion/10.1016/j.diagmicrobio.2021.115508
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34391075!8299291!34391075
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suck abstract from ncbi


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pmid34391075      Diagn+Microbiol+Infect+Dis 2021 ; 101 (3): 115508
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  • Target capture sequencing of SARS-CoV-2 genomes using the ONETest Coronaviruses Plus #MMPMID34391075
  • Zhan SH; Alamouti SM; Daneshpajouh H; Kwok BS; Lee MH; Khattra J; Houck HJ; Rand KH
  • Diagn Microbiol Infect Dis 2021[Nov]; 101 (3): 115508 PMID34391075show ga
  • We introduce a target capture next-generation sequencing methodology, the ONETest Coronaviruses Plus, to sequence the SARS-CoV-2 genome and select loci of other respiratory viruses. We applied the ONETest on 70 respiratory samples (collected in Florida, USA between May and July, 2020), in which SARS-CoV-2 had been detected by a PCR assay. For 48 of the samples, we also applied the ARTIC protocol. Of the 70 ONETest libraries, 45 (64%) had a (near-)complete sequence (>29,000 bases and >90% covered by >9 reads). Of the 48 ARTIC libraries, 25 (52%) had a (near-)complete sequence. In 19 out of 25 (76%) samples in which both the ONETest and ARTIC yielded (near-)complete sequences, the lineages assigned were identical. As a target capture approach, the ONETest is less prone to loss of sequence coverage than amplicon approaches, and thus can provide complete genomic information more often to track and monitor SARS-CoV-2 variants.
  • |*Genome, Viral[MESH]
  • |Adult[MESH]
  • |COVID-19/*diagnosis/*virology[MESH]
  • |Female[MESH]
  • |Genomics/*methods[MESH]
  • |Humans[MESH]
  • |Male[MESH]
  • |Middle Aged[MESH]
  • |Polymerase Chain Reaction/methods[MESH]
  • |Retrospective Studies[MESH]


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