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10.1080/22221751.2021.1964925

http://scihub22266oqcxt.onion/10.1080/22221751.2021.1964925
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suck abstract from ncbi


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pmid34348599      Emerg+Microbes+Infect 2021 ; 10 (1): 1683-1690
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  • A novel SARS-CoV-2 related coronavirus with complex recombination isolated from bats in Yunnan province, China #MMPMID34348599
  • Li LL; Wang JL; Ma XH; Sun XM; Li JS; Yang XF; Shi WF; Duan ZJ
  • Emerg Microbes Infect 2021[Dec]; 10 (1): 1683-1690 PMID34348599show ga
  • At the end of 2019, A new type of beta-CoV, SARS-CoV-2 emerged and triggered the COVID-19 pandemic, which spread overwhelmingly around the world in less than a year. However, the origin and direct ancestral viruses of SARS-CoV-2 remain unknown. RaTG13, a novel coronavirus found in bats in China's Yunnan Province, is the closest relative virus of the SARS-CoV-2 identified so far. In this study, a new SARS-CoV-2 related virus, provisionally named PrC31, was discovered in Yunnan province by retrospectively analyse bat next generation sequencing (NGS) data of intestinal samples collected in 2018. PrC31 shared 90.7% and 92.0% nucleotide identities to the genomes of SARS-CoV-2 and the bat SARSr-CoV ZC45, respectively. Sequence alignment of PrC31 showed that several genomic regions, especially orf1a and orf8 had the highest homology with those corresponding genomic regions of SARS-CoV-2 than any other related viruses. Phylogenetic analysis indicated that PrC31 shared a common ancestor with SARS-CoV-2 in evolutionary history. The differences between the PrC31 and SARS-CoV-2 genomes were mainly manifested in the spike genes. The amino acid homology between the receptor binding domains of PrC31 and SARS-CoV-2 was only 64.2%. Importantly, recombination analysis revealed that PrC31 underwent multiple complex recombination events (including three recombination breakpoints) involving the SARS-CoV and SARS-CoV-2 sub-lineages, indicating that PrC31 evolved from yet-to-be-identified intermediate recombination strains. Combined with previous studies, it is revealed that the beta-CoVs may possess a more complex recombination mechanism than we thought.
  • |*Recombination, Genetic[MESH]
  • |Amino Acid Sequence[MESH]
  • |Animals[MESH]
  • |China[MESH]
  • |Chiroptera/*virology[MESH]
  • |Genome, Viral[MESH]
  • |Phylogeny[MESH]
  • |SARS-CoV-2/classification/*genetics/*isolation & purification[MESH]
  • |Sequence Alignment[MESH]


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