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10.1080/17512433.2021.1959318

http://scihub22266oqcxt.onion/10.1080/17512433.2021.1959318
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34301158!ä!34301158

suck abstract from ncbi


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pmid34301158      Expert+Rev+Clin+Pharmacol 2021 ; 14 (10): 1305-1315
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  • Molecular docking and dynamics study to explore phytochemical ligand molecules against the main protease of SARS-CoV-2 from extensive phytochemical datasets #MMPMID34301158
  • Mahmud S; Mita MA; Biswas S; Paul GK; Promi MM; Afrose S; Hasan R; Shimu SS; Zaman S; Uddin S; Tallei TE; Emran TB; Saleh A
  • Expert Rev Clin Pharmacol 2021[Oct]; 14 (10): 1305-1315 PMID34301158show ga
  • BACKGROUND: The high transmission and pathogenicity of SARS-CoV-2 has led to a pandemic that has halted the world's economy and health. The newly evolved strains and scarcity of vaccines has worsened the situation. The main protease (M(pro)) of SARS-CoV-2 can act as a potential target due to its role in viral replication and conservation level. METHODS: In this study, we have enlisted more than 1100 phytochemicals from Asian plants based on deep literature mining. The compounds library was screened against the M(pro) of SARS-CoV-2. RESULTS: The selected three ligands, Flemichin, Delta-Oleanolic acid, and Emodin 1-O-beta-D-glucoside had a binding energy of -8.9, -8.9, -8.7 KJ/mol respectively. The compounds bind to the active groove of the main protease at; Cys145, Glu166, His41, Met49, Pro168, Met165, Gln189. The multiple descriptors from the simulation study; root mean square deviation, root mean square fluctuation, radius of gyration, hydrogen bond, solvent accessible surface area confirms the stable nature of the protein-ligand complexes. Furthermore, post-md analysis confirms the rigidness in the docked poses over the simulation trajectories. CONCLUSIONS: Our combinatorial drug design approaches may help researchers to identify suitable drug candidates against SARS-CoV-2.
  • |*Drug Discovery[MESH]
  • |Antiviral Agents/chemistry/*pharmacology[MESH]
  • |Databases, Chemical[MESH]
  • |Gene Expression Regulation, Viral/drug effects[MESH]
  • |Molecular Docking Simulation[MESH]
  • |Molecular Structure[MESH]
  • |Phytochemicals/chemistry/*pharmacology[MESH]
  • |SARS-CoV-2/*enzymology[MESH]


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