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10.1016/j.cell.2021.06.029

http://scihub22266oqcxt.onion/10.1016/j.cell.2021.06.029
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34265281!8241654!34265281
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suck abstract from ncbi

pmid34265281      Cell 2021 ; 184 (17): 4401-4413.e10
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  • Structure-guided T cell vaccine design for SARS-CoV-2 variants and sarbecoviruses #MMPMID34265281
  • Nathan A; Rossin EJ; Kaseke C; Park RJ; Khatri A; Koundakjian D; Urbach JM; Singh NK; Bashirova A; Tano-Menka R; Senjobe F; Waring MT; Piechocka-Trocha A; Garcia-Beltran WF; Iafrate AJ; Naranbhai V; Carrington M; Walker BD; Gaiha GD
  • Cell 2021[Aug]; 184 (17): 4401-4413.e10 PMID34265281show ga
  • The emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants that escape convalescent and vaccine-induced antibody responses has renewed focus on the development of broadly protective T-cell-based vaccines. Here, we apply structure-based network analysis and assessments of HLA class I peptide stability to define mutationally constrained CD8(+) T cell epitopes across the SARS-CoV-2 proteome. Highly networked residues are conserved temporally among circulating variants and sarbecoviruses and disproportionately impair spike pseudotyped lentivirus infectivity when mutated. Evaluation of HLA class I stabilizing activity for 18 globally prevalent alleles identifies CD8(+) T cell epitopes within highly networked regions with limited mutational frequencies in circulating SARS-CoV-2 variants and deep-sequenced primary isolates. Moreover, these epitopes elicit demonstrable CD8(+) T cell reactivity in convalescent individuals but reduced recognition in recipients of mRNA-based vaccines. These data thereby elucidate key mutationally constrained regions and immunogenic epitopes in the SARS-CoV-2 proteome for a global T-cell-based vaccine against emerging variants and SARS-like coronaviruses.
  • |*Epitopes, T-Lymphocyte[MESH]
  • |CD8-Positive T-Lymphocytes/immunology[MESH]
  • |COVID-19 Vaccines/chemistry/*immunology[MESH]
  • |COVID-19/immunology/prevention & control[MESH]
  • |HLA Antigens/immunology[MESH]
  • |Humans[MESH]
  • |SARS-CoV-2/genetics/immunology[MESH]


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