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10.1038/s41467-021-24577-9

http://scihub22266oqcxt.onion/10.1038/s41467-021-24577-9
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suck abstract from ncbi


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pmid34257311      Nat+Commun 2021 ; 12 (1): 4270
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  • Reprogrammed CRISPR-Cas13b suppresses SARS-CoV-2 replication and circumvents its mutational escape through mismatch tolerance #MMPMID34257311
  • Fareh M; Zhao W; Hu W; Casan JML; Kumar A; Symons J; Zerbato JM; Fong D; Voskoboinik I; Ekert PG; Rudraraju R; Purcell DFJ; Lewin SR; Trapani JA
  • Nat Commun 2021[Jul]; 12 (1): 4270 PMID34257311show ga
  • The recent dramatic appearance of variants of concern of SARS-coronavirus-2 (SARS-CoV-2) highlights the need for innovative approaches that simultaneously suppress viral replication and circumvent viral escape from host immunity and antiviral therapeutics. Here, we employ genome-wide computational prediction and single-nucleotide resolution screening to reprogram CRISPR-Cas13b against SARS-CoV-2 genomic and subgenomic RNAs. Reprogrammed Cas13b effectors targeting accessible regions of Spike and Nucleocapsid transcripts achieved >98% silencing efficiency in virus-free models. Further, optimized and multiplexed Cas13b CRISPR RNAs (crRNAs) suppress viral replication in mammalian cells infected with replication-competent SARS-CoV-2, including the recently emerging dominant variant of concern B.1.1.7. The comprehensive mutagenesis of guide-target interaction demonstrated that single-nucleotide mismatches does not impair the capacity of a potent single crRNA to simultaneously suppress ancestral and mutated SARS-CoV-2 strains in infected mammalian cells, including the Spike D614G mutant. The specificity, efficiency and rapid deployment properties of reprogrammed Cas13b described here provide a molecular blueprint for antiviral drug development to suppress and prevent a wide range of SARS-CoV-2 mutants, and is readily adaptable to other emerging pathogenic viruses.
  • |*Mutation[MESH]
  • |Animals[MESH]
  • |Antiviral Agents/pharmacology[MESH]
  • |COVID-19 Drug Treatment[MESH]
  • |COVID-19/virology[MESH]
  • |CRISPR-Cas Systems[MESH]
  • |Chlorocebus aethiops[MESH]
  • |Clustered Regularly Interspaced Short Palindromic Repeats[MESH]
  • |Drug Development[MESH]
  • |Genome, Viral[MESH]
  • |HEK293 Cells[MESH]
  • |Humans[MESH]
  • |SARS-CoV-2/genetics/*physiology[MESH]
  • |Spike Glycoprotein, Coronavirus/genetics/metabolism[MESH]
  • |Vero Cells[MESH]


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