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10.1186/s13059-021-02395-y

http://scihub22266oqcxt.onion/10.1186/s13059-021-02395-y
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34210356!8247108!34210356
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suck abstract from ncbi


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pmid34210356      Genome+Biol 2021 ; 22 (1): 196
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  • CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance #MMPMID34210356
  • Nicholls SM; Poplawski R; Bull MJ; Underwood A; Chapman M; Abu-Dahab K; Taylor B; Colquhoun RM; Rowe WPM; Jackson B; Hill V; O'Toole A; Rey S; Southgate J; Amato R; Livett R; Goncalves S; Harrison EM; Peacock SJ; Aanensen DM; Rambaut A; Connor TR; Loman NJ
  • Genome Biol 2021[Jul]; 22 (1): 196 PMID34210356show ga
  • In response to the ongoing SARS-CoV-2 pandemic in the UK, the COVID-19 Genomics UK (COG-UK) consortium was formed to rapidly sequence SARS-CoV-2 genomes as part of a national-scale genomic surveillance strategy. The network consists of universities, academic institutes, regional sequencing centres and the four UK Public Health Agencies. We describe the development and deployment of CLIMB-COVID, an encompassing digital infrastructure to address the challenge of collecting and integrating both genomic sequencing data and sample-associated metadata produced across the COG-UK network.
  • |*Cloud Computing[MESH]
  • |COVID-19/epidemiology[MESH]
  • |Epidemiological Monitoring[MESH]
  • |Genome, Viral[MESH]
  • |Genomics/*organization & administration[MESH]
  • |Humans[MESH]
  • |SARS-CoV-2/*genetics[MESH]
  • |Sequence Analysis, DNA[MESH]
  • |United Kingdom[MESH]
  • |User-Computer Interface[MESH]


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