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10.3390/molecules26123775

http://scihub22266oqcxt.onion/10.3390/molecules26123775
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34205768!8235472!34205768
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suck abstract from ncbi


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pmid34205768      Molecules 2021 ; 26 (12): ä
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  • Targeting 3CLpro and SARS-CoV-2 RdRp by Amphimedon sp Metabolites: A Computational Study #MMPMID34205768
  • Shady NH; Hayallah AM; Mohamed MFA; Ghoneim MM; Chilingaryan G; Al-Sanea MM; Fouad MA; Kamel MS; Abdelmohsen UR
  • Molecules 2021[Jun]; 26 (12): ä PMID34205768show ga
  • Since December 2019, novel coronavirus disease 2019 (COVID-19) pandemic has caused tremendous economic loss and serious health problems worldwide. In this study, we investigated 14 natural compounds isolated from Amphimedon sp. via a molecular docking study, to examine their ability to act as anti-COVID-19 agents. Moreover, the pharmacokinetic properties of the most promising compounds were studied. The docking study showed that virtually screened compounds were effective against the new coronavirus via dual inhibition of SARS-CoV-2 RdRp and the 3CL main protease. In particular, nakinadine B (1), 20-hepacosenoic acid (11) and amphimedoside C (12) were the most promising compounds, as they demonstrated good interactions with the pockets of both enzymes. Based on the analysis of the molecular docking results, compounds 1 and 12 were selected for molecular dynamics simulation studies. Our results showed Amphimedon sp. to be a rich source for anti-COVID-19 metabolites.
  • |Amino Sugars/chemistry/pharmacology[MESH]
  • |Animals[MESH]
  • |Antiviral Agents/chemistry/pharmacology[MESH]
  • |Binding Sites[MESH]
  • |Biological Products/*chemistry/isolation & purification/pharmacokinetics/*pharmacology[MESH]
  • |COVID-19 Drug Treatment[MESH]
  • |Computational Biology[MESH]
  • |Coronavirus 3C Proteases/antagonists & inhibitors/*chemistry/metabolism[MESH]
  • |Humans[MESH]
  • |Ligands[MESH]
  • |Models, Molecular[MESH]
  • |Molecular Docking Simulation[MESH]
  • |Molecular Dynamics Simulation[MESH]
  • |Porifera/*chemistry/*metabolism[MESH]
  • |Protease Inhibitors/chemistry/pharmacology[MESH]
  • |Pyridines/chemistry/pharmacology[MESH]
  • |RNA-Dependent RNA Polymerase/antagonists & inhibitors/*chemistry/metabolism[MESH]


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