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10.1038/s41467-021-22785-x

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suck abstract from ncbi


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pmid34168138      Nat+Commun 2021 ; 12 (1): 3917
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  • The architecture of the SARS-CoV-2 RNA genome inside virion #MMPMID34168138
  • Cao C; Cai Z; Xiao X; Rao J; Chen J; Hu N; Yang M; Xing X; Wang Y; Li M; Zhou B; Wang X; Wang J; Xue Y
  • Nat Commun 2021[Jun]; 12 (1): 3917 PMID34168138show ga
  • SARS-CoV-2 carries the largest single-stranded RNA genome and is the causal pathogen of the ongoing COVID-19 pandemic. How the SARS-CoV-2 RNA genome is folded in the virion remains unknown. To fill the knowledge gap and facilitate structure-based drug development, we develop a virion RNA in situ conformation sequencing technology, named vRIC-seq, for probing viral RNA genome structure unbiasedly. Using vRIC-seq data, we reconstruct the tertiary structure of the SARS-CoV-2 genome and reveal a surprisingly "unentangled globule" conformation. We uncover many long-range duplexes and higher-order junctions, both of which are under purifying selections and contribute to the sequential package of the SARS-CoV-2 genome. Unexpectedly, the D614G and the other two accompanying mutations may remodel duplexes into more stable forms. Lastly, the structure-guided design of potent small interfering RNAs can obliterate the SARS-CoV-2 in Vero cells. Overall, our work provides a framework for studying the genome structure, function, and dynamics of emerging deadly RNA viruses.
  • |Animals[MESH]
  • |COVID-19/genetics/*pathology/virology[MESH]
  • |Cells, Cultured[MESH]
  • |Chlorocebus aethiops[MESH]
  • |Genome, Viral[MESH]
  • |Humans[MESH]
  • |Nucleic Acid Conformation[MESH]
  • |RNA, Viral/*chemistry/genetics[MESH]
  • |SARS-CoV-2/*genetics/isolation & purification/pathogenicity[MESH]
  • |Sequence Analysis, RNA/*methods[MESH]


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