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10.4314/ejhs.v31i2.2

http://scihub22266oqcxt.onion/10.4314/ejhs.v31i2.2
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suck abstract from ncbi


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pmid34158771      Ethiop+J+Health+Sci 2021 ; 31 (2): 213-222
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  • Functional and Structural Characterization of SARS-Cov-2 Spike Protein: An In Silico Study #MMPMID34158771
  • Ebrahim-Saraie HS; Dehghani B; Mojtahedi A; Shenagari M; Hasannejad-Bibalan M
  • Ethiop J Health Sci 2021[Mar]; 31 (2): 213-222 PMID34158771show ga
  • BACKGROUND: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is the cause of the global outbreak of coronavirus disease 2019 (Covid-19), which has been considered as a pandemic by WHO. SARS-CoV-2 encodes four major structural proteins, among which spike protein has always been a main target for new vaccine studies. This in silico study aimed to investigate some physicochemical, functional, immunological, and structural features of spike protein using several bioinformatics tools. METHOD: We retrieved all SARS-CoV-2 spike protein sequences from different countries registered in NCBI GenBank. CLC Sequence Viewer was employed to translate and align the sequences, and several programs were utilized to predict B-cell epitopes. Modification sites such as phosphorylation, glycosylation, and disulfide bonds were defined. Secondary and tertiary structures of all sequences were further computed. RESULTS: Some mutations were determined, where only one (D614G) had a high prevalence. The mutations did not impact the B-cell and physicochemical properties of the spike protein. Seven disulfide bonds were specified and also predicted in several N-link glycosylation and phosphorylation sites. The results also indicated that spike protein is a non-allergen. CONCLUSION: In summary, our findings provided a deep understanding of spike protein, which can be valuable for future studies on SARS-CoV-2 infections and design of new vaccines.
  • |*COVID-19[MESH]
  • |*Spike Glycoprotein, Coronavirus[MESH]
  • |Computer Simulation[MESH]
  • |Humans[MESH]


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