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10.1080/22221751.2021.1943540

http://scihub22266oqcxt.onion/10.1080/22221751.2021.1943540
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suck abstract from ncbi


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pmid34125658      Emerg+Microbes+Infect 2021 ; 10 (1): 1293-1299
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  • Rapidly emerging SARS-CoV-2 B 1 1 7 sub-lineage in the United States of America with spike protein D178H and membrane protein V70L mutations #MMPMID34125658
  • Shen L; Bard JD; Triche TJ; Judkins AR; Biegel JA; Gai X
  • Emerg Microbes Infect 2021[Dec]; 10 (1): 1293-1299 PMID34125658show ga
  • The SARS-CoV-2 B.1.1.7 lineage is highly infectious and as of April 2021 accounted for 92% of COVID-19 cases in Europe and 59% of COVID-19 cases in the U.S. It is defined by the N501Y mutation in the receptor-binding domain (RBD) of the Spike (S) protein, and a few other mutations. These include two mutations in the N terminal domain (NTD) of the S protein, HV69-70del and Y144del (also known as Y145del due to the presence of tyrosine at both positions). We recently identified several emerging SARS-CoV-2 variants of concerns, characterized by Membrane (M) protein mutations, including I82T and V70L. We now identify a sub-lineage of B.1.1.7 that emerged through sequential acquisitions of M:V70L in November 2020 followed by a novel S:D178H mutation first observed in early February 2021. The percentage of B.1.1.7 isolates in the US that belong to this sub-lineage increased from 0.15% in February 2021 to 1.8% in April 2021. To date, this sub-lineage appears to be U.S.-specific with reported cases in 31 states, including Hawaii. As of April 2021, it constituted 36.8% of all B.1.1.7 isolates in Washington. Phylogenetic analysis and transmission inference with Nextstrain suggest this sub-lineage likely originated in either California or Washington. Structural analysis revealed that the S:D178H mutation is in the NTD of the S protein and close to two other signature mutations of B.1.1.7, HV69-70del and Y144del. It is surface exposed and may alter NTD tertiary configuration or accessibility, and thus has the potential to affect neutralization by NTD directed antibodies.
  • |*Mutation[MESH]
  • |Binding Sites[MESH]
  • |Humans[MESH]
  • |Models, Molecular[MESH]
  • |Phylogeny[MESH]
  • |Protein Domains[MESH]
  • |Protein Structure, Tertiary[MESH]
  • |SARS-CoV-2/*classification/genetics[MESH]
  • |Sequence Analysis, RNA[MESH]
  • |Spike Glycoprotein, Coronavirus/chemistry/*genetics[MESH]
  • |United States[MESH]
  • |Viral Matrix Proteins/*genetics[MESH]


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