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10.1093/bib/bbab226

http://scihub22266oqcxt.onion/10.1093/bib/bbab226
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suck abstract from ncbi


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pmid34117734      Brief+Bioinform 2021 ; 22 (6): ä
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  • DeepR2cov: deep representation learning on heterogeneous drug networks to discover anti-inflammatory agents for COVID-19 #MMPMID34117734
  • Wang X; Xin B; Tan W; Xu Z; Li K; Li F; Zhong W; Peng S
  • Brief Bioinform 2021[Nov]; 22 (6): ä PMID34117734show ga
  • Recent studies have demonstrated that the excessive inflammatory response is an important factor of death in coronavirus disease 2019 (COVID-19) patients. In this study, we propose a deep representation on heterogeneous drug networks, termed DeepR2cov, to discover potential agents for treating the excessive inflammatory response in COVID-19 patients. This work explores the multi-hub characteristic of a heterogeneous drug network integrating eight unique networks. Inspired by the multi-hub characteristic, we design 3 billion special meta paths to train a deep representation model for learning low-dimensional vectors that integrate long-range structure dependency and complex semantic relation among network nodes. Based on the representation vectors and transcriptomics data, we predict 22 drugs that bind to tumor necrosis factor-alpha or interleukin-6, whose therapeutic associations with the inflammation storm in COVID-19 patients, and molecular binding model are further validated via data from PubMed publications, ongoing clinical trials and a docking program. In addition, the results on five biomedical applications suggest that DeepR2cov significantly outperforms five existing representation approaches. In summary, DeepR2cov is a powerful network representation approach and holds the potential to accelerate treatment of the inflammatory responses in COVID-19 patients. The source code and data can be downloaded from https://github.com/pengsl-lab/DeepR2cov.git.
  • |*COVID-19 Drug Treatment[MESH]
  • |*Drug Repositioning[MESH]
  • |Anti-Inflammatory Agents/chemistry/therapeutic use[MESH]
  • |COVID-19/complications/genetics/virology[MESH]
  • |Computational Biology[MESH]
  • |Deep Learning[MESH]
  • |Humans[MESH]
  • |Inflammation/complications/*drug therapy/genetics/virology[MESH]
  • |Neural Networks, Computer[MESH]
  • |SARS-CoV-2/*drug effects/pathogenicity[MESH]
  • |Software[MESH]


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