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10.1016/j.xcrm.2021.100319

http://scihub22266oqcxt.onion/10.1016/j.xcrm.2021.100319
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34075364!8157118!34075364
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suck abstract from ncbi


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pmid34075364      Cell+Rep+Med 2021 ; 2 (6): 100319
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  • Intrinsic signal amplification by type III CRISPR-Cas systems provides a sequence-specific SARS-CoV-2 diagnostic #MMPMID34075364
  • Santiago-Frangos A; Hall LN; Nemudraia A; Nemudryi A; Krishna P; Wiegand T; Wilkinson RA; Snyder DT; Hedges JF; Cicha C; Lee HH; Graham A; Jutila MA; Taylor MP; Wiedenheft B
  • Cell Rep Med 2021[Jun]; 2 (6): 100319 PMID34075364show ga
  • There is an urgent need for inexpensive new technologies that enable fast, reliable, and scalable detection of viruses. Here, we repurpose the type III CRISPR-Cas system for sensitive and sequence-specific detection of SARS-CoV-2. RNA recognition by the type III CRISPR complex triggers Cas10-mediated polymerase activity, which simultaneously generates pyrophosphates, protons, and cyclic oligonucleotides. We show that all three Cas10-polymerase products are detectable using colorimetric or fluorometric readouts. We design ten guide RNAs that target conserved regions of SARS-CoV-2 genomes. Multiplexing improves the sensitivity of amplification-free RNA detection from 10(7) copies/muL for a single guide RNA to 10(6) copies/muL for ten guides. To decrease the limit of detection to levels that are clinically relevant, we developed a two-pot reaction consisting of RT-LAMP followed by T7-transcription and type III CRISPR-based detection. The two-pot reaction has a sensitivity of 200 copies/muL and is completed using patient samples in less than 30 min.
  • |COVID-19 Nucleic Acid Testing/*methods[MESH]
  • |COVID-19/*diagnosis/virology[MESH]
  • |CRISPR-Cas Systems/*genetics[MESH]
  • |Colorimetry[MESH]
  • |Humans[MESH]
  • |Molecular Diagnostic Techniques[MESH]
  • |Nasopharynx/virology[MESH]
  • |Nucleic Acid Amplification Techniques[MESH]
  • |RNA, Guide, CRISPR-Cas Systems/metabolism[MESH]
  • |RNA, Viral/chemistry/*metabolism[MESH]


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