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10.1038/s41467-021-22664-5

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suck abstract from ncbi


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pmid34035246      Nat+Commun 2021 ; 12 (1): 3132
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  • Multiplexed detection of SARS-CoV-2 and other respiratory infections in high throughput by SARSeq #MMPMID34035246
  • Yelagandula R; Bykov A; Vogt A; Heinen R; Ozkan E; Strobl MM; Baar JC; Uzunova K; Hajdusits B; Kordic D; Suljic E; Kurtovic-Kozaric A; Izetbegovic S; Schaeffer J; Hufnagl P; Zoufaly A; Seitz T; Fodinger M; Allerberger F; Stark A; Cochella L; Elling U
  • Nat Commun 2021[May]; 12 (1): 3132 PMID34035246show ga
  • The COVID-19 pandemic has demonstrated the need for massively-parallel, cost-effective tests monitoring viral spread. Here we present SARSeq, saliva analysis by RNA sequencing, a method to detect SARS-CoV-2 and other respiratory viruses on tens of thousands of samples in parallel. SARSeq relies on next generation sequencing of multiple amplicons generated in a multiplexed RT-PCR reaction. Two-dimensional, unique dual indexing, using four indices per sample, enables unambiguous and scalable assignment of reads to individual samples. We calibrate SARSeq on SARS-CoV-2 synthetic RNA, virions, and hundreds of human samples of various types. Robustness and sensitivity were virtually identical to quantitative RT-PCR. Double-blinded benchmarking to gold standard quantitative-RT-PCR performed by human diagnostics laboratories confirms this high sensitivity. SARSeq can be used to detect Influenza A and B viruses and human rhinovirus in parallel, and can be expanded for detection of other pathogens. Thus, SARSeq is ideally suited for differential diagnostic of infections during a pandemic.
  • |*Clinical Laboratory Techniques[MESH]
  • |*High-Throughput Screening Assays[MESH]
  • |COVID-19/diagnosis[MESH]
  • |Diagnosis, Differential[MESH]
  • |High-Throughput Nucleotide Sequencing[MESH]
  • |Humans[MESH]
  • |Polymerase Chain Reaction[MESH]
  • |RNA, Viral/genetics[MESH]
  • |Respiratory Tract Infections/*diagnosis/virology[MESH]
  • |SARS-CoV-2/genetics/isolation & purification[MESH]
  • |Saliva/virology[MESH]
  • |Sensitivity and Specificity[MESH]
  • |Viral Proteins/genetics[MESH]


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