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10.1093/cid/ciab456

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34013321!8194511!34013321
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suck abstract from ncbi


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pmid34013321      Clin+Infect+Dis 2022 ; 74 (3): 446-454
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  • Novel Canine Coronavirus Isolated from a Hospitalized Patient With Pneumonia in East Malaysia #MMPMID34013321
  • Vlasova AN; Diaz A; Damtie D; Xiu L; Toh TH; Lee JS; Saif LJ; Gray GC
  • Clin Infect Dis 2022[Feb]; 74 (3): 446-454 PMID34013321show ga
  • BACKGROUND: During the validation of a highly sensitive panspecies coronavirus (CoV) seminested reverse-transcription polymerase chain reaction (RT-PCR) assay, we found canine CoV (CCoV) RNA in nasopharyngeal swab samples from 8 of 301 patients (2.5%) hospitalized with pneumonia during 2017-2018 in Sarawak, Malaysia. Most patients were children living in rural areas with frequent exposure to domesticated animals and wildlife. METHODS: Specimens were further studied with universal and species-specific CoV and CCoV 1-step RT-PCR assays, and viral isolation was performed in A72 canine cells. Complete genome sequencing was conducted using the Sanger method. RESULTS: Two of 8 specimens contained sufficient amounts of CCoVs as confirmed by less-sensitive single-step RT-PCR assays, and 1 specimen demonstrated cytopathic effects in A72 cells. Complete genome sequencing of the virus causing cytopathic effects identified it as a novel canine-feline recombinant alphacoronavirus (genotype II) that we named CCoV-human pneumonia (HuPn)-2018. Most of the CCoV-HuPn-2018 genome is more closely related to a CCoV TN-449, while its S gene shared significantly higher sequence identity with CCoV-UCD-1 (S1 domain) and a feline CoV WSU 79-1683 (S2 domain). CCoV-HuPn-2018 is unique for a 36-nucleotide (12-amino acid) deletion in the N protein and the presence of full-length and truncated 7b nonstructural protein, which may have clinical relevance. CONCLUSIONS: This is the first report of a novel canine-feline recombinant alphacoronavirus isolated from a human patient with pneumonia. If confirmed as a pathogen, it may represent the eighth unique coronavirus known to cause disease in humans. Our findings underscore the public health threat of animal CoVs and a need to conduct better surveillance for them.
  • |*Coronavirus Infections/veterinary[MESH]
  • |*Coronavirus, Canine/genetics[MESH]
  • |*Dog Diseases[MESH]
  • |*Pneumonia[MESH]
  • |Animals[MESH]
  • |Cats[MESH]
  • |Dogs[MESH]
  • |Humans[MESH]
  • |Malaysia[MESH]


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