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10.3390/v13050742

http://scihub22266oqcxt.onion/10.3390/v13050742
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33922716!8146324!33922716
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suck abstract from ncbi


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pmid33922716      Viruses 2021 ; 13 (5): ä
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  • Accessible LAMP-Enabled Rapid Test (ALERT) for Detecting SARS-CoV-2 #MMPMID33922716
  • Bektas A; Covington MF; Aidelberg G; Arce A; Matute T; Nunez I; Walsh J; Boutboul D; Delaugerre C; Lindner AB; Federici F; Jayaprakash AD
  • Viruses 2021[Apr]; 13 (5): ä PMID33922716show ga
  • The coronavirus disease 2019 (COVID-19) pandemic has highlighted bottlenecks in large-scale, frequent testing of populations for infections. Polymerase chain reaction (PCR)-based diagnostic tests are expensive, reliant on centralized labs, can take days to deliver results, and are prone to backlogs and supply shortages. Antigen tests that bind and detect the surface proteins of a virus are rapid and scalable but suffer from high false negative rates. To address this problem, an inexpensive, simple, and robust 60-minute do-it-yourself (DIY) workflow to detect viral RNA from nasal swabs or saliva with high sensitivity (0.1 to 2 viral particles/muL) and specificity (>97% true negative rate) utilizing reverse transcription loop-mediated isothermal amplification (RT-LAMP) was developed. ALERT (Accessible LAMP-Enabled Rapid Test) incorporates the following features: (1) increased shelf-life and ambient temperature storage, compared to liquid reaction mixes, by using wax layers to isolate enzymes from other reagents; (2) improved specificity compared to other LAMP end-point reporting methods, by using sequence-specific QUASR (quenching of unincorporated amplification signal reporters); (3) increased sensitivity, compared to methods without purification through use of a magnetic wand to enable pipette-free concentration of sample RNA and cell debris removal; (4) quality control with a nasopharyngeal-specific mRNA target; and (5) co-detection of other respiratory viruses, such as influenza B, by multiplexing QUASR-modified RT-LAMP primer sets. The flexible nature of the ALERT workflow allows easy, at-home and point-of-care testing for individuals and higher-throughput processing for labs and hospitals. With minimal effort, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)-specific primer sets can be swapped out for other targets to repurpose ALERT to detect other viruses, microorganisms, or nucleic acid-based markers.
  • |COVID-19 Testing/*methods[MESH]
  • |COVID-19/diagnosis/*virology[MESH]
  • |Clinical Laboratory Techniques/methods[MESH]
  • |Humans[MESH]
  • |Male[MESH]
  • |Molecular Diagnostic Techniques/*methods[MESH]
  • |Nasopharynx/virology[MESH]
  • |Nucleic Acid Amplification Techniques/*methods[MESH]
  • |Point-of-Care Testing[MESH]
  • |RNA, Viral/genetics/isolation & purification[MESH]
  • |SARS-CoV-2/*isolation & purification[MESH]


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