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10.3934/mbe.2021120

http://scihub22266oqcxt.onion/10.3934/mbe.2021120
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33892550!8279046!33892550
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suck abstract from ncbi


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pmid33892550      Math+Biosci+Eng 2021 ; 18 (3): 2372-2383
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  • Electrostatic features for nucleocapsid proteins of SARS-CoV and SARS-CoV-2 #MMPMID33892550
  • Guo W; Xie Y; E Lopez-Hernandez A; Sun S; Li L
  • Math Biosci Eng 2021[Mar]; 18 (3): 2372-2383 PMID33892550show ga
  • COVID-19 is increasingly affecting human health and global economy. Understanding the fundamental mechanisms of Severe Acute Respiratory Syndrome CoronaVirus 2 (SARS-CoV-2) is highly demanded to develop treatments for COVID-19. SARS-CoV and SARS-CoV-2 share 92.06% identity in their N protein RBDs' sequences, which results in very similar structures. However, the SARS-CoV-2 is more easily to spread. Utilizing multi-scale computational approaches, this work studied the fundamental mechanisms of the nucleocapsid (N) proteins of SARS-CoV and SARS-CoV-2, including their stabilities and binding strengths with RNAs at different pH values. Electrostatic potential on the surfaces of N proteins show that both the N proteins of SARS-CoV and SARS-CoV-2 have dominantly positive potential to attract RNAs. The binding forces between SARS-CoV N protein and RNAs at different distances are similar to that of SARS-CoV-2, both in directions and magnitudes. The electric filed lines between N proteins and RNAs are also similar for both SARS-CoV and SARS-CoV-2. The folding energy and binding energy dependence on pH revealed that the best environment for N proteins to perform their functions with RNAs is the weak acidic environment.
  • |*COVID-19[MESH]
  • |*Nucleocapsid Proteins[MESH]
  • |Humans[MESH]
  • |SARS-CoV-2[MESH]


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