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10.1002/jmv.26974

http://scihub22266oqcxt.onion/10.1002/jmv.26974
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33782990!8250465!33782990
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suck abstract from ncbi


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pmid33782990      J+Med+Virol 2021 ; 93 (7): 4382-4391
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  • Comprehensive comparative genomic and microsatellite analysis of SARS, MERS, BAT-SARS, and COVID-19 coronaviruses #MMPMID33782990
  • Rehman HA; Ramzan F; Basharat Z; Shakeel M; Khan MUG; Khan IA
  • J Med Virol 2021[Jul]; 93 (7): 4382-4391 PMID33782990show ga
  • The coronavirus disease 2019 (COVID-19) pandemic has spread around the globe very rapidly. Previously, the evolution pattern and similarity among the COVID-19 causative organism severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and causative organisms of other similar infections have been determined using a single type of genetic marker in different studies. Herein, the SARS-CoV-2 and related beta coronaviruses Middle East respiratory syndrome coronavirus (MERS-CoV), SARS-CoV, bat coronavirus (BAT-CoV) were comprehensively analyzed using a custom-built pipeline that employed phylogenetic approaches based on multiple types of genetic markers including the whole genome sequences, mutations in nucleotide sequences, mutations in protein sequences, and microsatellites. The whole-genome sequence-based phylogeny revealed that the strains of SARS-CoV-2 are more similar to the BAT-CoV strains. The mutational analysis showed that on average MERS-CoV and BAT-CoV genomes differed at 134.21 and 136.72 sites, respectively, whereas the SARS-CoV genome differed at 26.64 sites from the reference genome of SARS-CoV-2. Furthermore, the microsatellite analysis highlighted a relatively higher number of average microsatellites for MERS-CoV and SARS-CoV-2 (106.8 and 107, respectively), and a lower number for SARS-CoV and BAT-CoV (95.8 and 98.5, respectively). Collectively, the analysis of multiple genetic markers of selected beta viral genomes revealed that the newly born SARS-COV-2 is closely related to BAT-CoV, whereas, MERS-CoV is more distinct from the SARS-CoV-2 than BAT-CoV and SARS-CoV.
  • |Alphacoronavirus/*genetics[MESH]
  • |Animals[MESH]
  • |Base Sequence/genetics[MESH]
  • |Chiroptera/virology[MESH]
  • |DNA Mutational Analysis[MESH]
  • |Genetic Markers/genetics[MESH]
  • |Genetic Variation/genetics[MESH]
  • |Genome, Viral/*genetics[MESH]
  • |Humans[MESH]
  • |Microsatellite Repeats/*genetics[MESH]
  • |Middle East Respiratory Syndrome Coronavirus/*genetics[MESH]
  • |Phylogeny[MESH]
  • |SARS-CoV-2/*genetics[MESH]
  • |Sequence Alignment[MESH]
  • |Sequence Homology, Nucleic Acid[MESH]
  • |Severe acute respiratory syndrome-related coronavirus/*genetics[MESH]


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