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10.1080/07391102.2021.1902399

http://scihub22266oqcxt.onion/10.1080/07391102.2021.1902399
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33749545!ä!33749545

suck abstract from ncbi


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pmid33749545      J+Biomol+Struct+Dyn 2022 ; 40 (17): 7815-7828
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  • On the search for COVID-19 therapeutics: identification of potential SARS-CoV-2 main protease inhibitors by virtual screening, pharmacophore modeling and molecular dynamics #MMPMID33749545
  • Hassan A; Arafa RK
  • J Biomol Struct Dyn 2022[Oct]; 40 (17): 7815-7828 PMID33749545show ga
  • COVID-19 also known as SARS-CoV-2 outbreak in late 2019 and its worldwide pandemic spread has taken the world by surprise. The minute-to-minute increasing coronavirus cases (>85 M) and progressive deaths ( approximately 1.8 M) calls for finding a cure to this devastating pandemic. While there have been many attempts to find biologically active molecules targeting SARS-CoV-2 for treatment of this viral infection, none has found a way to the clinic yet. In this study, a 3-feature structure-based pharmacophore model was designed for SARS-CoV-2 main protease (M(Pro)) that plays a vital role in the viral cellular penetration. High throughput virtual screening of the lead-like ZINC library was then performed to find a potent inhibitor employing the predesigned pharmacophore. In-silico pharmacokinetics/toxicity prediction study was subsequently applied towards the best hits. Finally, a 50 ns molecular dynamics simulation was carried out for the best hit and compared to the co-crystallized ligand where the hit compound displayed high binding and comparable interactions. The results identified new hits for SARS-CoV-2 M(Pro) inhibition showing good docking score, pharmacokinetics and toxicity profile, drug-likeness, high binding energy in addition to a promising synthetic accessibility. Identifying new small compounds as potential leads for inhibiting SARS-CoV-2 is a very important step towards designing a synthesizing of promising drug candidates.Communicated by Ramaswamy H. Sarma.
  • |*COVID-19 Drug Treatment[MESH]
  • |Coronavirus 3C Proteases[MESH]
  • |Cysteine Endopeptidases/chemistry[MESH]
  • |Humans[MESH]
  • |Ligands[MESH]
  • |Molecular Docking Simulation[MESH]
  • |Molecular Dynamics Simulation[MESH]
  • |Protease Inhibitors/chemistry/pharmacology[MESH]
  • |SARS-CoV-2[MESH]


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