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10.1038/s41467-021-21996-6

http://scihub22266oqcxt.onion/10.1038/s41467-021-21996-6
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33741959!7979722!33741959
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suck abstract from ncbi


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pmid33741959      Nat+Commun 2021 ; 12 (1): 1739
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  • An engineered CRISPR-Cas12a variant and DNA-RNA hybrid guides enable robust and rapid COVID-19 testing #MMPMID33741959
  • Ooi KH; Liu MM; Tay JWD; Teo SY; Kaewsapsak P; Jin S; Lee CK; Hou J; Maurer-Stroh S; Lin W; Yan B; Yan G; Gao YG; Tan MH
  • Nat Commun 2021[Mar]; 12 (1): 1739 PMID33741959show ga
  • Extensive testing is essential to break the transmission of SARS-CoV-2, which causes the ongoing COVID-19 pandemic. Here, we present a CRISPR-based diagnostic assay that is robust to viral genome mutations and temperature, produces results fast, can be applied directly on nasopharyngeal (NP) specimens without RNA purification, and incorporates a human internal control within the same reaction. Specifically, we show that the use of an engineered AsCas12a enzyme enables detection of wildtype and mutated SARS-CoV-2 and allows us to perform the detection step with loop-mediated isothermal amplification (LAMP) at 60-65 degrees C. We also find that the use of hybrid DNA-RNA guides increases the rate of reaction, enabling our test to be completed within 30 minutes. Utilizing clinical samples from 72 patients with COVID-19 infection and 57 healthy individuals, we demonstrate that our test exhibits a specificity and positive predictive value of 100% with a sensitivity of 50 and 1000 copies per reaction (or 2 and 40 copies per microliter) for purified RNA samples and unpurified NP specimens respectively.
  • |*RNA, Guide, CRISPR-Cas Systems[MESH]
  • |Bacterial Proteins/genetics[MESH]
  • |COVID-19 Testing/*methods[MESH]
  • |COVID-19/*diagnosis/virology[MESH]
  • |CRISPR-Associated Proteins/genetics[MESH]
  • |CRISPR-Cas Systems[MESH]
  • |Clustered Regularly Interspaced Short Palindromic Repeats[MESH]
  • |Endodeoxyribonucleases/genetics[MESH]
  • |Humans[MESH]
  • |Molecular Diagnostic Techniques/methods[MESH]
  • |Mutation[MESH]
  • |Nasopharynx/virology[MESH]
  • |Nucleic Acid Amplification Techniques/methods[MESH]
  • |RNA, Viral/genetics[MESH]
  • |SARS-CoV-2/*genetics[MESH]


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