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10.7554/eLife.65453

http://scihub22266oqcxt.onion/10.7554/eLife.65453
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33729154!8009659!33729154
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suck abstract from ncbi


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pmid33729154      Elife 2021 ; 10 (ä): ä
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  • Genomic and healthcare dynamics of nosocomial SARS-CoV-2 transmission #MMPMID33729154
  • Ellingford JM; George R; McDermott JH; Ahmad S; Edgerley JJ; Gokhale D; Newman WG; Ball S; Machin N; Black GC
  • Elife 2021[Mar]; 10 (ä): ä PMID33729154show ga
  • Understanding the effectiveness of infection control methods in reducing and preventing SARS-CoV-2 transmission in healthcare settings is of high importance. We sequenced SARS-CoV-2 genomes for patients and healthcare workers (HCWs) across multiple geographically distinct UK hospitals, obtaining 173 high-quality SARS-CoV-2 genomes. We integrated patient movement and staff location data into the analysis of viral genome data to understand spatial and temporal dynamics of SARS-CoV-2 transmission. We identified eight patient contact clusters (PCC) with significantly increased similarity in genomic variants compared to non-clustered samples. Incorporation of HCW location further increased the number of individuals within PCCs and identified additional links in SARS-CoV-2 transmission pathways. Patients within PCCs carried viruses more genetically identical to HCWs in the same ward location. SARS-CoV-2 genome sequencing integrated with patient and HCW movement data increases identification of outbreak clusters. This dynamic approach can support infection control management strategies within the healthcare setting.
  • |Aged[MESH]
  • |COVID-19/*transmission/virology[MESH]
  • |Contact Tracing[MESH]
  • |Cross Infection/*transmission/virology[MESH]
  • |Female[MESH]
  • |Health Personnel[MESH]
  • |Humans[MESH]
  • |Infectious Disease Transmission, Patient-to-Professional[MESH]
  • |Infectious Disease Transmission, Professional-to-Patient[MESH]
  • |Male[MESH]
  • |SARS-CoV-2/*genetics/isolation & purification[MESH]


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