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10.7883/yoken.JJID.2020.1079

http://scihub22266oqcxt.onion/10.7883/yoken.JJID.2020.1079
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33642428!ä!33642428

suck abstract from ncbi


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pmid33642428      Jpn+J+Infect+Dis 2021 ; 74 (5): 465-472
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  • Performance Evaluation of Real-Time RT-PCR Assays for the Detection of Severe Acute Respiratory Syndrome Coronavirus-2 Developed by the National Institute of Infectious Diseases, Japan #MMPMID33642428
  • Shirato K; Tomita Y; Katoh H; Yamada S; Fukushi S; Matsuyama S; Takeda M
  • Jpn J Infect Dis 2021[Sep]; 74 (5): 465-472 PMID33642428show ga
  • Soon after the 2019 outbreak of coronavirus disease 2019 in Wuhan, China, a protocol for real-time RT-PCR assay detection of severe acute respiratory syndrome coronavirus (SARS-CoV-2) was established by the National Institute of Infectious Diseases (NIID) in Japan. The protocol used Charite's nucleocapsid (Sarbeco-N) and NIID nucleocapsid (NIID-N2) assays. During the following months, SARS-CoV-2 spread and caused a global pandemic, and various SARS-CoV-2 sequences were registered in public databases, such as the Global Initiative on Sharing All Influenza Data (GISAID). In this study, we evaluated the S2 assay (NIID-S2) that was newly developed to replace the Sarbeco-N assay and the performance of the NIID-N2 and NIID-S2 assays, referring to mismatches in the primer/probe targeted region. We found that the analytical sensitivity and specificity of the NIID-S2 set were comparable to those of the NIID-N2 assay, and the detection rate for clinical specimens was identical to that of the NIID-N2 assay. Furthermore, among the available sequences (approximately 192,000), the NIID-N2 and NIID-S2 sets had 2.6% and 1.2% mismatched sequences, respectively, although most of these mismatches did not affect the amplification efficiency, except the 3' end of the NIID-N2 forward primer. These findings indicate that the previously developed NIID-N2 assay is suitable for the detection of SARS-CoV-2 with support from the newly developed NIID-S2 set.
  • |COVID-19 Nucleic Acid Testing/*methods[MESH]
  • |COVID-19/*diagnosis[MESH]
  • |Coronavirus Nucleocapsid Proteins/genetics[MESH]
  • |DNA Primers/genetics[MESH]
  • |Humans[MESH]
  • |Japan[MESH]
  • |Phosphoproteins/genetics[MESH]
  • |RNA, Viral/analysis/genetics[MESH]
  • |SARS-CoV-2/genetics/*isolation & purification[MESH]
  • |Sensitivity and Specificity[MESH]


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